Browse Element(s) Details


Os.15798.1.S1_at

Description gb:AK102541.1
DB_XREF= gi:32987750
TID=Os.15798.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU033170(S4339),D41681(S4339) correspond to a region of the predicted gene.~Similar to Pisum sativum mRNA for pIAA45.1.(X68215) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096K11, full insert sequence.
FL= gb:AK102541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0704011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07000Os.25299.1.S1_x_at11/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07000OsAffx.10341.1.S1_x_at4/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07010Os.25299.3.A1_at11/116+3321910..3326627transposon protein, putative, unclassified, expressed
LOC_Os06g07020Os.23613.1.S1_at10/116+3327558..3330550Zinc finger, C2H2 type family protein, expressed
LOC_Os06g07030Os.38447.1.S1_s_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07030Os.4804.1.S1_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07040Os.15798.1.S1_at11/116+3341465..3345319AUX/IAA family protein, expressed
LOC_Os06g07060OsAffx.22575.1.S1_at4/116+3354616..3355026hypothetical protein
LOC_Os06g07070Os.4208.1.S1_at11/116+3359543..3362524Protein kinase domain containing protein, expressed
LOC_Os06g07080Os.4209.1.S1_a_at11/116+3362870..3367262Pre-mRNA processing splicing factor 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15798.1.S1_at--87--6231Chr06:3341868..3341890 (23 bp)
GAGGCCTTTGCCAAGTCGGTGAAAC
LOC_Os06g07040
Os.15798.1.S1_at--749--2371Chr06:3341847..3341871 (25 bp)
AAACGGCTCAAGATACTGGTGTAAC
LOC_Os06g07040
Os.15798.1.S1_at--374--6971Chr06:3341682..3341706 (25 bp)
GTAGCTGTTGTCATCAATCACCTTG
LOC_Os06g07040
Os.15798.1.S1_at--451--391Chr06:3341666..3341690 (25 bp)
ATCACCTTGCATTTCGTGTCAAACT
LOC_Os06g07040
Os.15798.1.S1_at--396--7451Chr06:3341651..3341675 (25 bp)
GTGTCAAACTACATCTGTGGCCAGC
LOC_Os06g07040
Os.15798.1.S1_at--32--8451Chr06:3341633..3341657 (25 bp)
GGCCAGCGCACAGTAGTGTTAGTAT
LOC_Os06g07040
Os.15798.1.S1_at--730--10071Chr06:3341609..3341633 (25 bp)
TAGTGTACACCGTAGAGTCACCTCG
LOC_Os06g07040
Os.15798.1.S1_at--48--6451Chr06:3341580..3341604 (25 bp)
GATCAGCACGTGCATGCATCTGTAT
LOC_Os06g07040
Os.15798.1.S1_at--948--331Chr06:3341554..3341578 (25 bp)
ATACACCGCCACATATGCACAGGAT
LOC_Os06g07040
Os.15798.1.S1_at--308--5231Chr06:3341523..3341547 (25 bp)
GAATACTGAGCATATCCTGTACGGG
LOC_Os06g07040
Os.15798.1.S1_at--107--6511Chr06:3341491..3341515 (25 bp)
GATATGGGTGTTATGGCCTACCAAA
LOC_Os06g07040
Target Sequence 
GAGGCCTTTGCCAAGTCGGTGAAACGGCTCAAGATACTGGTGTAACTGACTGCAAATTAAGCTACNAGTACTAGTCTTTA
CTACTTCGAATAAAATTGTACGTGAACGGGATNATTTTGTTCACGTTTCNCTCATCATAAATGTGTAGTNTTTCAGCAAT
TTCATAAGCATGACGAATGAANNCTCGTAGCTGTTGTCATCAATCACCTTGCATTTCGTGTCAAACTACATCTGTGGCCA
GCGCACAGTAGTGTTAGTATAGTGTACACCGTAGAGTCACCTCGCTGTGATCAGCACGTGCATGCATCTGTATAATACAC
CGCCACATATGCACAGGATGGTACTGAATACTGAGCATATCCTGTACGGGGAGTTCAGATATGGGTGTTATGGCCTACCA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis