Browse Element(s) Details

Os.25299.3.A1_at

Description

gb:AK066174.1
DB_XREF= gi:32976192
TID=Os.25299.3
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056I21, full insert sequence.
FL= gb:AK066174.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07010	11/11	transposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06950	OsAffx.4746.1.S1_x_at	11/11	6	+	3300365..3302146	hypothetical protein
LOC_Os06g06950	OsAffx.4746.1.S1_at	11/11	6	+	3300365..3302146	hypothetical protein
LOC_Os06g06950	OsAffx.22457.1.A1_x_at	1/11	6	+	3300365..3302146	hypothetical protein
LOC_Os06g06960	OsAffx.27482.2.S1_s_at	11/11	6	+	3304185..3306862	D-mannose binding lectin family protein, expressed
LOC_Os06g06970	Os.50638.1.S1_at	11/11	6	+	3309867..3310810	AP2 domain containing protein, expressed
LOC_Os06g06970	OsAffx.4747.1.S1_s_at	11/11	6	+	3309867..3310810	AP2 domain containing protein, expressed
LOC_Os06g06980	Os.4198.1.S1_at	11/11	6	+	3313113..3314453	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980	Os.4198.1.S1_x_at	11/11	6	+	3313113..3314453	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990	OsAffx.27483.1.S1_at	11/11	6	+	3316032..3316379	hypothetical protein
LOC_Os06g07000	Os.25299.1.S1_x_at	11/11	6	+	3318113..3321611	F-box domain containing protein, expressed
LOC_Os06g07000	OsAffx.10341.1.S1_x_at	4/11	6	+	3318113..3321611	F-box domain containing protein, expressed
LOC_Os06g07010	Os.25299.3.A1_at	11/11	6	+	3321910..3326627	transposon protein, putative, unclassified, expressed
LOC_Os06g07020	Os.23613.1.S1_at	10/11	6	+	3327558..3330550	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g07030	Os.38447.1.S1_s_at	11/11	6	+	3336100..3337157	AP2 domain containing protein, expressed
LOC_Os06g07030	Os.4804.1.S1_at	11/11	6	+	3336100..3337157	AP2 domain containing protein, expressed
LOC_Os06g07040	Os.15798.1.S1_at	11/11	6	+	3341465..3345319	AUX/IAA family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.25299.3.A1_at--16--475	1	Chr06:3326030..3326054 (25 bp)	GATGGATTTTGTCAACCTTCCCGGA	LOC_Os06g07010
Os.25299.3.A1_at--728--1063	1	Chr06:3326047..3326071 (25 bp)	TTCCCGGAGGTGTGATGTTGCTTTT	LOC_Os06g07010
Os.25299.3.A1_at--767--791	1	Chr06:3326072..3326096 (25 bp)	GGATGTTAATTTCTGGCTCGCAACT	LOC_Os06g07010
Os.25299.3.A1_at--949--747	1	Chr06:3326103..3326127 (25 bp)	GTGTGTAACTATTCTGGTCTTTGAC	LOC_Os06g07010
Os.25299.3.A1_at--582--715	1	Chr06:3326119..3326143 (25 bp)	GTCTTTGACGTTTCTGTTCTGTTGA	LOC_Os06g07010
Os.25299.3.A1_at--630--549	1	Chr06:3326228..3326252 (25 bp)	GAACATGTTGCTTCCATTGTCTTAA	LOC_Os06g07010
Os.25299.3.A1_at--853--243	1	Chr06:3326312..3326336 (25 bp)	AAAAGATGATCAGCTGGCGCCCTTG	LOC_Os06g07010
Os.25299.3.A1_at--346--841	1	Chr06:3326346..3326370 (25 bp)	GGCCCATGGTGCTACTAGTTGTCAA	LOC_Os06g07010
Os.25299.3.A1_at--978--277	1	Chr06:3326369..3326393 (25 bp)	AAGAGCAGATAGCATCCCTTCTCGA	LOC_Os06g07010
Os.25299.3.A1_at--958--743	1	Chr06:3326543..3326567 (25 bp)	GTGTACCTGTACAATCTGACTGCTG	LOC_Os06g07010
Os.25299.3.A1_at--307--555	1	Chr06:3326601..3326625 (25 bp)	GAAACTGTCTATGCTCTTCGATTGT	LOC_Os06g07010

Target Sequence

GATGGATTTTGTCAACCTTCCCGGAGGTGTGATGTTGCTTTTGGATGTTAATTTCTGGCTCGCAACTGTTGATGTGTGTA
ACTATTCTGGTCTTTGACGTTTCTGTTCTGTTGAAGTGGAGTTCTAGTAATGTCAATTAGGTGACTGTAGGCTTGTAAGT
TATAATTGGAGTGTAGATGCTGGATGAATAGAGGCCAGGAACATGTTGCTTCCATTGTCTTAAGGAAAAGGTTGTAACTG
GGAGTAGTCACTAGCTATTTACAGGATCAGATTCTTTGGGCTAAAAGATGATCAGCTGGCGCCCTTGTTGCCTCTTGGCC
CATGGTGCTACTAGTTGTCAAGAGCAGATAGCATCCCTTCTCGAAGGAGTTGAGCTGCAGAACAATGTGAAAAGGAAGCT
GAAATGGAAGCTCATGCAGATTCAGTGAAGTGCNCCGTCTCTGCATGGGAGGCAGTAGTTCCAAACTGACCTTGTTATAT
GTTTTTTTTTGTGAAGATTTTGGATCTAATTTAGTGTACCTGTACAATCTGACTGCTGATTAAGATGACNCAGCAGTATT
GATCTGATATTGAAACTGTCTATGCTCTTCGATTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis