Browse Element(s) Details


OsAffx.4747.1.S1_s_at

Description tigr:9634.m00629
TID=OsAffx.4747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0697011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06930NANA6+3285676..3288132D-mannose binding lectin family protein
LOC_Os06g06940OsAffx.27482.1.S1_at11/116+3293198..3295173S-locus-like receptor protein kinase, putative
LOC_Os06g06950OsAffx.4746.1.S1_x_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.4746.1.S1_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.22457.1.A1_x_at1/116+3300365..3302146hypothetical protein
LOC_Os06g06960OsAffx.27482.2.S1_s_at11/116+3304185..3306862D-mannose binding lectin family protein, expressed
LOC_Os06g06970Os.50638.1.S1_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06970OsAffx.4747.1.S1_s_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06980Os.4198.1.S1_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980Os.4198.1.S1_x_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990OsAffx.27483.1.S1_at11/116+3316032..3316379hypothetical protein
LOC_Os06g07000Os.25299.1.S1_x_at11/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07000OsAffx.10341.1.S1_x_at4/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07010Os.25299.3.A1_at11/116+3321910..3326627transposon protein, putative, unclassified, expressed
LOC_Os06g07020Os.23613.1.S1_at10/116+3327558..3330550Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009631biological_processcold acclimation
GO:0009651biological_processresponse to salt stress
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016049biological_processcell growth
GO:0048510biological_processregulation of timing of transition from vegetative to reproductive phase
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4747.1.S1_s_at--953--4391Chr06:3309906..3309930 (25 bp)
GCCAACACTAACCAACTGCTTGAGA
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--416--2652Chr06:3309915..3309939 (25 bp)
AACCAACTGCTTGAGACGTCGCACA
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--146--5771Chr06:3309929..3309953 (25 bp)
GACGTCGCACACGTCATGGAGAAGA
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--883--4391Chr06:3309962..3309986 (25 bp)
GCCAGCGGGCAATTGATGACCTCCT
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--798--5771Chr06:3310045..3310069 (25 bp)
GACGAGGCACCTAGTGTTCCGTGGG
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--820--5213Chr06:3310609..3310633 (25 bp)
GAATTCAATGATCGTTTTAATCCAC
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--947--2831Chr06:3310650..3310674 (25 bp)
AAGTCTTTCTGCTACTAACCATGAT
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--87--9811Chr06:3310665..3310689 (25 bp)
TAACCATGATAACACACCACCTTTT
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--62--2171Chr06:3310678..3310702 (25 bp)
ACACCACCTTTTTCAATGGAGGAGG
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--991--1011Chr06:3310700..3310724 (25 bp)
AGGTAGGCGCGGACGCCCTCGCCAT
LOC_Os06g06970
OsAffx.4747.1.S1_s_at--36--431Chr06:3310723..3310747 (25 bp)
ATCATCGTCGATGTCGCCACTGATG
LOC_Os06g06970
Target Sequence 
GCCAACACTAACCAACTGCTTGAGACGTCGCACACGTCATGGAGAAGAACACCGCCGCCAGCGGGCAATTGATGACCTCC
TCCGCGGAGGCGACGCCGTCGTCGCCGAAGCGGCCGGCGGGGCGAACCAAGTTCCAGGAGACGAGGCACCTAGTGTTCCG
TGGGGTGCGATGGCGTGGGTGCGCGGGGCGGTGGGTGTGCAAGATGAATTCAATGATCGTTTTAATCCACGAATTATCAA
AATATCAAGTCTTTCTGCTACTAACCATGATAACACACCACCTTTTTCAATGGAGGAGGTAGGCGCGGACGCCCTCGCCA
TCATCGTCGATGTCGCCACTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4747.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis