Browse Element(s) Details


OsAffx.4746.1.S1_at

Description tigr:9634.m00627
TID=OsAffx.4746.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0695011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06910OsAffx.27481.1.S1_at11/116+3276864..3277976expressed protein
LOC_Os06g06920NANA6+3280883..3284653D-mannose binding lectin family protein, expressed
LOC_Os06g06930NANA6+3285676..3288132D-mannose binding lectin family protein
LOC_Os06g06940OsAffx.27482.1.S1_at11/116+3293198..3295173S-locus-like receptor protein kinase, putative
LOC_Os06g06950OsAffx.4746.1.S1_x_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.4746.1.S1_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.22457.1.A1_x_at1/116+3300365..3302146hypothetical protein
LOC_Os06g06960OsAffx.27482.2.S1_s_at11/116+3304185..3306862D-mannose binding lectin family protein, expressed
LOC_Os06g06970Os.50638.1.S1_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06970OsAffx.4747.1.S1_s_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06980Os.4198.1.S1_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980Os.4198.1.S1_x_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990OsAffx.27483.1.S1_at11/116+3316032..3316379hypothetical protein
LOC_Os06g07000Os.25299.1.S1_x_at11/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07000OsAffx.10341.1.S1_x_at4/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07010Os.25299.3.A1_at11/116+3321910..3326627transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4746.1.S1_at--741--6571Chr06:3300989..3301013 (25 bp)
GATTCTCCGCGCAGAAGCCGACGGC
LOC_Os06g06950
OsAffx.4746.1.S1_at--303--4611Chr06:3300966..3300990 (25 bp)
GCGAGCGACCAAGATCGGAAGCCTA
LOC_Os06g06950
OsAffx.4746.1.S1_at--768--5871Chr06:3300964..3300988 (25 bp)
GAGCGACCAAGATCGGAAGCCTATG
LOC_Os06g06950
OsAffx.4746.1.S1_at--339--5851Chr06:3300960..3300984 (25 bp)
GACCAAGATCGGAAGCCTATGTTCT
LOC_Os06g06950
OsAffx.4746.1.S1_at--764--1271Chr06:3300955..3300979 (25 bp)
AGATCGGAAGCCTATGTTCTCCGCG
LOC_Os06g06950
OsAffx.4746.1.S1_at--311--8191Chr06:3300950..3300974 (25 bp)
GGAAGCCTATGTTCTCCGCGCAGAA
LOC_Os06g06950
OsAffx.4746.1.S1_at--1070--2651Chr06:3300948..3300972 (25 bp)
AAGCCTATGTTCTCCGCGCAGAAAC
LOC_Os06g06950
OsAffx.4746.1.S1_at--731--731Chr06:3300942..3300966 (25 bp)
ATGTTCTCCGCGCAGAAACCGACGG
LOC_Os06g06950
OsAffx.4746.1.S1_at--527--4611Chr06:3300918..3300942 (25 bp)
GCGAGCGACCATGATCGTACGCCGG
LOC_Os06g06950
OsAffx.4746.1.S1_at--942--9371Chr06:3300765..3300789 (25 bp)
TCGAGCTACGTCACGCTGCTCCAGG
LOC_Os06g06950
OsAffx.4746.1.S1_at--631--3971Chr06:3300504..3300528 (25 bp)
CGGTGCAGGAGTACGTGCTGTCCGA
LOC_Os06g06950
Target Sequence 
GATTCTCCGCGCAGAAGCCGACGGCGAGCGACCAAGATCGGAAGCCTATGTTCTCCGCGCAGAAACCGACGGCGAGCGAC
CATGATCGTACGCCGGGGCACGTGCCCGACAAGCACGACGGCGACACGGCCGACTGGAAGGCCGCGCGGCAGCTGCTTCA
GGGCATCGTCACGCCGTCGCGGGAGCGCCAGTTCCCGGCGGCGAAGCCCTCCGACGTCGTCGCGTCGAGCTACGTCACGC
TGCTCCAGGCGGCGAACTACGCGACGTTCTCGCTGGACTACGCGCTGGAGCTGGAGGAGAGGCTGCGCGCGCGGGAGCGC
GACGCCGCCGCGGAGGCGGACGCCATGCGGAAGGAGGTCGAGGAGAAGGCGCAGCGCGGGCTCGCGGCGGCGAAGGCGGC
GGCGGTGCAGGAGTACGTGCTGTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis