Browse Element(s) Details

OsAffx.27483.1.S1_at

Description

tigr:9634.m00631
TID=OsAffx.27483.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06990	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06940	OsAffx.27482.1.S1_at	11/11	6	+	3293198..3295173	S-locus-like receptor protein kinase, putative
LOC_Os06g06950	OsAffx.4746.1.S1_x_at	11/11	6	+	3300365..3302146	hypothetical protein
LOC_Os06g06950	OsAffx.4746.1.S1_at	11/11	6	+	3300365..3302146	hypothetical protein
LOC_Os06g06950	OsAffx.22457.1.A1_x_at	1/11	6	+	3300365..3302146	hypothetical protein
LOC_Os06g06960	OsAffx.27482.2.S1_s_at	11/11	6	+	3304185..3306862	D-mannose binding lectin family protein, expressed
LOC_Os06g06970	Os.50638.1.S1_at	11/11	6	+	3309867..3310810	AP2 domain containing protein, expressed
LOC_Os06g06970	OsAffx.4747.1.S1_s_at	11/11	6	+	3309867..3310810	AP2 domain containing protein, expressed
LOC_Os06g06980	Os.4198.1.S1_at	11/11	6	+	3313113..3314453	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980	Os.4198.1.S1_x_at	11/11	6	+	3313113..3314453	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990	OsAffx.27483.1.S1_at	11/11	6	+	3316032..3316379	hypothetical protein
LOC_Os06g07000	Os.25299.1.S1_x_at	11/11	6	+	3318113..3321611	F-box domain containing protein, expressed
LOC_Os06g07000	OsAffx.10341.1.S1_x_at	4/11	6	+	3318113..3321611	F-box domain containing protein, expressed
LOC_Os06g07010	Os.25299.3.A1_at	11/11	6	+	3321910..3326627	transposon protein, putative, unclassified, expressed
LOC_Os06g07020	Os.23613.1.S1_at	10/11	6	+	3327558..3330550	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g07030	Os.38447.1.S1_s_at	11/11	6	+	3336100..3337157	AP2 domain containing protein, expressed
LOC_Os06g07030	Os.4804.1.S1_at	11/11	6	+	3336100..3337157	AP2 domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27483.1.S1_at--497--461	1	Chr06:3316107..3316131 (25 bp)	GCGACGCCCTCCAATGTTGACAGCA	LOC_Os06g06990
OsAffx.27483.1.S1_at--370--581	1	Chr06:3316109..3316133 (25 bp)	GACGCCCTCCAATGTTGACAGCATC	LOC_Os06g06990
OsAffx.27483.1.S1_at--1124--801	1	Chr06:3316202..3316226 (25 bp)	GGAGGAGAACACACAGCTCCGCTAT	LOC_Os06g06990
OsAffx.27483.1.S1_at--198--807	1	Chr06:3316205..3316229 (25 bp)	GGAGAACACACAGCTCCGCTATGGT	LOC_Os06g06990
OsAffx.27483.1.S1_at--613--159	1	Chr06:3316216..3316240 (25 bp)	AGCTCCGCTATGGTTTGTCGCCGGG	LOC_Os06g06990
OsAffx.27483.1.S1_at--774--379	1	Chr06:3316218..3316242 (25 bp)	CTCCGCTATGGTTTGTCGCCGGGCG	LOC_Os06g06990
OsAffx.27483.1.S1_at--1075--415	1	Chr06:3316234..3316258 (25 bp)	CGCCGGGCGGCCATCACTGTGGTTT	LOC_Os06g06990
OsAffx.27483.1.S1_at--85--399	1	Chr06:3316237..3316261 (25 bp)	CGGGCGGCCATCACTGTGGTTTGTT	LOC_Os06g06990
OsAffx.27483.1.S1_at--614--471	1	Chr06:3316240..3316264 (25 bp)	GCGGCCATCACTGTGGTTTGTTGCT	LOC_Os06g06990
OsAffx.27483.1.S1_at--911--443	1	Chr06:3316243..3316267 (25 bp)	GCCATCACTGTGGTTTGTTGCTGGC	LOC_Os06g06990
OsAffx.27483.1.S1_at--184--421	2	Chr06:3316314..3316338 (25 bp)	CCCCGCCGGCTTCGCATGAGAGAGA	LOC_Os06g06990

Target Sequence

GCGACGCCCTCCAATGTTGACAGCATCATCGCCATGGGCGGCAACGCCACCGCCGCCGAGGATGATGACGATGGCGACGG
GTTCGAGGAGCAGGAGGAGGAGAACACACAGCTCCGCTATGGTTTGTCGCCGGGCGGCCATCACTGTGGTTTGTTGCTGG
CCCGCTCCGCCCCGCCGGCTTCGTGCGCCGCCACTCTGCCCACACCACCCCGCCGGCTTCGCATGAGAGAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis