Browse Element(s) Details


Os.23613.1.S1_at

Description gb:AK106360.1
DB_XREF= gi:32991569
TID=Os.23613.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A12, full insert sequence.
FL= gb:AK106360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0702010/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06960OsAffx.27482.2.S1_s_at11/116+3304185..3306862D-mannose binding lectin family protein, expressed
LOC_Os06g06970Os.50638.1.S1_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06970OsAffx.4747.1.S1_s_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06980Os.4198.1.S1_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980Os.4198.1.S1_x_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990OsAffx.27483.1.S1_at11/116+3316032..3316379hypothetical protein
LOC_Os06g07000Os.25299.1.S1_x_at11/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07000OsAffx.10341.1.S1_x_at4/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07010Os.25299.3.A1_at11/116+3321910..3326627transposon protein, putative, unclassified, expressed
LOC_Os06g07020Os.23613.1.S1_at10/116+3327558..3330550Zinc finger, C2H2 type family protein, expressed
LOC_Os06g07030Os.38447.1.S1_s_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07030Os.4804.1.S1_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07040Os.15798.1.S1_at11/116+3341465..3345319AUX/IAA family protein, expressed
LOC_Os06g07060OsAffx.22575.1.S1_at4/116+3354616..3355026hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005739cellular_componentmitochondrion
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23613.1.S1_at--393--531Chr06:3330074..3330098 (25 bp)
ATCGCATCGACACAAACACAGCTGA
LOC_Os06g07020
Os.23613.1.S1_at--977--5451Chr06:3330103..3330127 (25 bp)
GAACGGCCATCTTCTAACATGCAGG
LOC_Os06g07020
Os.23613.1.S1_at--1043--2491Chr06:3330143..3330167 (25 bp)
AACATCATCCTGTTGGGCACTTGGG
LOC_Os06g07020
Os.23613.1.S1_at--207--5411Chr06:3330213..3330237 (25 bp)
GAAGCTGGCTGCACATTTCACATGA
LOC_Os06g07020
Os.23613.1.S1_at--958--10511Chr06:3330229..3330253 (25 bp)
TTCACATGAGAATCGCGTCCATTTC
LOC_Os06g07020
Os.23613.1.S1_at--1016--10451Chr06:3330270..3330294 (25 bp)
TTACCTTCCAGCTGATTTCGACGAA
LOC_Os06g07020
Os.23613.1.S1_at--183--8771Chr06:3330303..3330327 (25 bp)
TGTATGAGCATGTTTGTCGCGGCGA
LOC_Os06g07020
Os.23613.1.S1_at--185--1051Chr06:3330330..3330354 (25 bp)
AGGTGGCAGCCATCCGAGTACAAGA
LOC_Os06g07020
Os.23613.1.S1_at--731--2751Chr06:3330351..3330375 (25 bp)
AAGAAAGTAATTCCTACCTCTCCTG
LOC_Os06g07020
Os.23613.1.S1_at--431--5111Chr06:3330453..3330477 (25 bp)
GCACTGACATGCATATCTCGACTAT
LOC_Os06g07020
Os.23613.1.S1_at--1073--10131NONE
TATCGAGTGCATGCCACTTTTTTGC
NONE
Target Sequence 
ATCGCATCGACACAAACACAGCTGAAAAAGAACGGCCATCTTCTAACATGCAGGCTGCAAATTNTGAATAACATCATCCT
GTTGGGCACTTGGGCTGTAGCTGAAGCTGGAGAAAGAAGCTCATGGTTNGAGAGTTGGAGAAGCTGGCTGCACATTTCAC
ATGAGAATCGCGTCCATTTCAATNAGGCACACAAGGTTACCTTCCAGCTGATTTCGACGAAGAAACAACTGTATGAGCAT
GTTTGTCGCGGCGAGGAGGTGGCAGCCATCCGAGTACAAGAAAGTAATTCCTACCTCTCCTGCCGGAGAAGCTCAGCTAA
AATTGATTAGAAACACGAGATGTCGGGATAGTTCCTGGATGGCATTGCTGAACATGGATGCACTGACATGCATATCTCGA
CTATTAGCTGATGTATTGAGTAGAGTAAAGTATTACACCGANGGCAAATTATCGAGTGCATGCCACTTTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis