Browse Element(s) Details


Os.4198.1.S1_at

Description gb:AK065744.1
DB_XREF= gi:32975762
TID=Os.4198.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013039L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039L12, full insert sequence.
FL= gb:AK065744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0698011/11Caffeoyl-CoA O-methyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06930NANA6+3285676..3288132D-mannose binding lectin family protein
LOC_Os06g06940OsAffx.27482.1.S1_at11/116+3293198..3295173S-locus-like receptor protein kinase, putative
LOC_Os06g06950OsAffx.4746.1.S1_x_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.4746.1.S1_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.22457.1.A1_x_at1/116+3300365..3302146hypothetical protein
LOC_Os06g06960OsAffx.27482.2.S1_s_at11/116+3304185..3306862D-mannose binding lectin family protein, expressed
LOC_Os06g06970Os.50638.1.S1_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06970OsAffx.4747.1.S1_s_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06980Os.4198.1.S1_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980Os.4198.1.S1_x_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990OsAffx.27483.1.S1_at11/116+3316032..3316379hypothetical protein
LOC_Os06g07000Os.25299.1.S1_x_at11/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07000OsAffx.10341.1.S1_x_at4/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07010Os.25299.3.A1_at11/116+3321910..3326627transposon protein, putative, unclassified, expressed
LOC_Os06g07020Os.23613.1.S1_at10/116+3327558..3330550Zinc finger, C2H2 type family protein, expressed
LOC_Os06g07030Os.38447.1.S1_s_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07030Os.4804.1.S1_at11/116+3336100..3337157AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0042409molecular_functioncaffeoyl-CoA O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4198.1.S1_at--555--8231Chr06:3313964..3313988 (25 bp)
GGCAACCATGGGTCGTTCGACTTCG
LOC_Os06g06980
Os.4198.1.S1_at--578--2631Chr06:3313967..3313991 (25 bp)
AACCATGGGTCGTTCGACTTCGTGT
LOC_Os06g06980
Os.4198.1.S1_at--470--8611Chr06:3313972..3313996 (25 bp)
TGGGTCGTTCGACTTCGTGTTCGTC
LOC_Os06g06980
Os.4198.1.S1_at--638--4731Chr06:3313976..3314000 (25 bp)
TCGTTCGACTTCGTGTTCGTCGACG
LOC_Os06g06980
Os.4198.1.S1_at--1091--4191Chr06:3314001..3314025 (25 bp)
CCGACAAGGACAACTACCTCAACTA
LOC_Os06g06980
Os.4198.1.S1_at--748--8131Chr06:3314008..3314032 (25 bp)
GGACAACTACCTCAACTACCACGAG
LOC_Os06g06980
Os.4198.1.S1_at--855--1711Chr06:3314025..3314049 (25 bp)
ACCACGAGCGGCTGATGAAGCTGGT
LOC_Os06g06980
Os.4198.1.S1_at--231--1871Chr06:3314028..3314052 (25 bp)
ACGAGCGGCTGATGAAGCTGGTCAA
LOC_Os06g06980
Os.4198.1.S1_at--423--2471Chr06:3314078..3314102 (25 bp)
AACACGCTCTGGAACGGCTCCGTCG
LOC_Os06g06980
Os.4198.1.S1_at--119--9911Chr06:3314141..3314165 (25 bp)
TACTACCGCGACTTCGTGCTCGAGC
LOC_Os06g06980
Os.4198.1.S1_at--736--7291Chr06:3314272..3314296 (25 bp)
GTGCGACTCCGGCCGATGCCCAAGA
LOC_Os06g06980
Target Sequence 
GGCAACCATGGGTCGTTCGACTTCGTGTTCGTCGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGGCTGATGAA
GCTGGTCAAGGTCGGCGGCCTCGTCGGCTACGACAACACGCTCTGGAACGGCTCCGTCGTGCTCCCCGCCGACGCCCCCA
TGCGCAAGTACATCCGCTACTACCGCGACTTCGTGCTCGAGCTCAACAAGGCCCTCGCCGCCGACCACCGCGTCGAGATC
TGCCAGCTCCCCGTCGGCGACGGCATCACCCTCTGCCGCCGCGTCAAGTGAGCCCNCCGCCGNCGCGAGTGCGACTCCGG
CCGATGCCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis