Browse Element(s) Details


OsAffx.22457.1.A1_x_at

Description gb:NM_186533.1
DB_XREF= gi:34900151
TID=OsAffx.22457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OJ1779_B07.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g069501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06910OsAffx.27481.1.S1_at11/116+3276864..3277976expressed protein
LOC_Os06g06920NANA6+3280883..3284653D-mannose binding lectin family protein, expressed
LOC_Os06g06930NANA6+3285676..3288132D-mannose binding lectin family protein
LOC_Os06g06940OsAffx.27482.1.S1_at11/116+3293198..3295173S-locus-like receptor protein kinase, putative
LOC_Os06g06950OsAffx.4746.1.S1_x_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.4746.1.S1_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.22457.1.A1_x_at1/116+3300365..3302146hypothetical protein
LOC_Os06g06960OsAffx.27482.2.S1_s_at11/116+3304185..3306862D-mannose binding lectin family protein, expressed
LOC_Os06g06970Os.50638.1.S1_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06970OsAffx.4747.1.S1_s_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06980Os.4198.1.S1_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980Os.4198.1.S1_x_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990OsAffx.27483.1.S1_at11/116+3316032..3316379hypothetical protein
LOC_Os06g07000Os.25299.1.S1_x_at11/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07000OsAffx.10341.1.S1_x_at4/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07010Os.25299.3.A1_at11/116+3321910..3326627transposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22457.1.A1_x_at--386--3351Chr07:6374963..6374987 (25 bp)
CACGCCTTTCCCGACGGTGGGAGAG
NONE
OsAffx.22457.1.A1_x_at--921--8151Chr07:6374916..6374940 (25 bp)
GGAAAGGCTGCAGCTCTGGCGTCCT
NONE
OsAffx.22457.1.A1_x_at--181--2951Chr07:6374913..6374937 (25 bp)
AAGGCTGCAGCTCTGGCGTCCTCCT
NONE
OsAffx.22457.1.A1_x_at--727--8332Chr12:21304874..21304894 (21 bp)
GGCTGCTGCTGCTCAGGCGGCTCCA
NONE
OsAffx.22457.1.A1_x_at--388--10771Chr07:6374691..6374715 (25 bp)
TTGACCTGCGCCTGCTTCTTCTTGT
NONE
OsAffx.22457.1.A1_x_at--367--9573Chr07:103225..103247 (22 bp)
TCTTCTTGTCGTCGTCGGCGGCTTC
NONE
OsAffx.22457.1.A1_x_at--660--3912Chr07:6374657..6374681 (25 bp)
CGGCTTCCGCGGCTTCACGTTGGAT
NONE
OsAffx.22457.1.A1_x_at--970--10651Chr07:6374653..6374677 (25 bp)
TTCCGCGGCTTCACGTTGGATCTGG
NONE
OsAffx.22457.1.A1_x_at--919--4131Chr07:6374650..6374674 (25 bp)
CGCGGCTTCACGTTGGATCTGGCCG
NONE
OsAffx.22457.1.A1_x_at--164--9011Chr07:6374612..6374636 (25 bp)
TGAATGGCTCGAAGCCGACGGCGGC
NONE
OsAffx.22457.1.A1_x_at--482--4693Chr08:26026798..26026821 (24 bp)
GCGGCGGGAGCGGACGGCTTCTCCT
NONE
Target Sequence 
CACGCCTTTCCCGACGGTGGGAGAGGCGGGGGCGGCGGAGGAGGAGGGGAAAGGCTGCAGCTCTGGCGTCCTCCTCGCCT
CCCGTCGTCCTCGTCGCCTCCCTCGCCGCGCCTCCTTCTCCGGCTGCTGCTGCTCAGGCGGCTCCACCGCGGCGACCTCA
CCGAGGGACGCCTCCACCTCGAGCAGCCGCCGCCGCCGCGAGGAGGAGGAGCGGGTGGGCCGGGCCGCCGGCGGCGGCAC
GGAGGAGGTGCGGGTGCAGGTGCGGCGGGGGCTTGACCTGCGCCTGCTTCTTCTTGTCGTCGTCGGCGGCTTCCGCGGCT
TCACGTTGGATCTGGCCGGGGTCGGCGGGAGTGAATGGCTCGAAGCCGACGGCGGCCGGCGGCGGGAGCGGACGGCTTCT
CCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22457.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis