Browse Element(s) Details


OsAffx.27482.2.S1_s_at

Description tigr:9634.m00628
TID=OsAffx.27482.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0696011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06920NANA6+3280883..3284653D-mannose binding lectin family protein, expressed
LOC_Os06g06930NANA6+3285676..3288132D-mannose binding lectin family protein
LOC_Os06g06940OsAffx.27482.1.S1_at11/116+3293198..3295173S-locus-like receptor protein kinase, putative
LOC_Os06g06950OsAffx.4746.1.S1_x_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.4746.1.S1_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.22457.1.A1_x_at1/116+3300365..3302146hypothetical protein
LOC_Os06g06960OsAffx.27482.2.S1_s_at11/116+3304185..3306862D-mannose binding lectin family protein, expressed
LOC_Os06g06970Os.50638.1.S1_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06970OsAffx.4747.1.S1_s_at11/116+3309867..3310810AP2 domain containing protein, expressed
LOC_Os06g06980Os.4198.1.S1_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980Os.4198.1.S1_x_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990OsAffx.27483.1.S1_at11/116+3316032..3316379hypothetical protein
LOC_Os06g07000Os.25299.1.S1_x_at11/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07000OsAffx.10341.1.S1_x_at4/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07010Os.25299.3.A1_at11/116+3321910..3326627transposon protein, putative, unclassified, expressed
LOC_Os06g07020Os.23613.1.S1_at10/116+3327558..3330550Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27482.2.S1_s_at--465--2291Chr06:3304622..3304646 (25 bp)
AAATGGCTGTTAAGCGCACCGCTGA
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--377--1651Chr06:3304610..3304634 (25 bp)
AGCGCACCGCTGATGTTCTAAAAGA
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--421--10491Chr06:3304521..3304545 (25 bp)
TTCAACTATTCACAGGCAGCAACAG
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--169--2251Chr06:3304490..3304514 (25 bp)
AAATTGCAGTGTCATGTGTGGAAGA
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--1004--10091Chr06:3304462..3304486 (25 bp)
TAGGCGCAGAAGACCGAGCATGAGC
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--659--7471Chr06:3304436..3304460 (25 bp)
GTGTGGTTGAAATCCTGCTTTCTCT
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--209--8671Chr06:3304411..3304435 (25 bp)
TGTGGAATAATGTCCTTGCTATTGC
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--150--2351Chr06:3304327..3304351 (25 bp)
AAAGACAAGTCAATGGGCGCCAGAT
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--1136--3191Chr06:3304317..3304341 (25 bp)
CAATGGGCGCCAGATTTAAGGTAAA
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--217--3111Chr06:3304248..3304272 (25 bp)
AATATTCACCATAACCATTAGTCTA
LOC_Os06g06960
OsAffx.27482.2.S1_s_at--81--2052Chr12:19313929..19313948 (20 bp)
ACTTTGTTCTATATGCATAAGGCGC
NONE
Target Sequence 
AAATGGCTGTTAAGCGCACCGCTGATGTTCTAAAAGAGAAATTAGCTAGCGAAGATCAATCATGGCTGCTGGACTTTGTT
GACTGCAGGATGAATGGAGAATTCAACTATTCACAGGCAGCAACAGTGCTAAAAATTGCAGTGTCATGTGTGGAAGAAGA
TAGGCGCAGAAGACCGAGCATGAGCAGTGTGGTTGAAATCCTGCTTTCTCTTGTGGAATAATGTCCTTGCTATTGCTACA
ACTCTATCTAAGCTGATATGTGTGTTGTGAGAAAAATAATAAGGTATGGTGTTGAAAAGACAAGTCAATGGGCGCCAGAT
TTAAGGTAAAATGTCAAATGTGATTTTAGTAGTTGTTGTATTCCATCAAATTGTAATATTCACCATAACCATTAGTCTAT
TTGTTTAGATACTTTGTTCTATATGCATAAGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27482.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis