Browse Element(s) Details


Os.4804.1.S1_at

Description gb:AK107775.1
DB_XREF= gi:32992984
TID=Os.4804.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST AU055776(S20048) corresponds to a region of the predicted gene.~Similar to Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial cds.(AF003103) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-B12, full insert sequence.
FL= gb:AK107775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0703011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06980Os.4198.1.S1_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980Os.4198.1.S1_x_at11/116+3313113..3314453Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990OsAffx.27483.1.S1_at11/116+3316032..3316379hypothetical protein
LOC_Os06g07000Os.25299.1.S1_x_at11/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07000OsAffx.10341.1.S1_x_at4/116+3318113..3321611F-box domain containing protein, expressed
LOC_Os06g07010Os.25299.3.A1_at11/116+3321910..3326627transposon protein, putative, unclassified, expressed
LOC_Os06g07020Os.23613.1.S1_at10/116+3327558..3330550Zinc finger, C2H2 type family protein, expressed
LOC_Os06g07030Os.38447.1.S1_s_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07030Os.4804.1.S1_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07040Os.15798.1.S1_at11/116+3341465..3345319AUX/IAA family protein, expressed
LOC_Os06g07060OsAffx.22575.1.S1_at4/116+3354616..3355026hypothetical protein
LOC_Os06g07070Os.4208.1.S1_at11/116+3359543..3362524Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4804.1.S1_at--872--5171Chr06:3336973..3336997 (25 bp)
GCAAGTAGGAATCTAGAGCTCAGCT
LOC_Os06g07030
Os.4804.1.S1_at--69--1191Chr06:3336976..3337000 (25 bp)
AGTAGGAATCTAGAGCTCAGCTCGT
LOC_Os06g07030
Os.4804.1.S1_at--320--1971Chr06:3337021..3337045 (25 bp)
ACTGTACTAGGAGCGTGCGTGTCAG
LOC_Os06g07030
Os.4804.1.S1_at--56--9151Chr06:3337036..3337060 (25 bp)
TGCGTGTCAGCGTGAGCATGTAGCT
LOC_Os06g07030
Os.4804.1.S1_at--219--7451Chr06:3337039..3337063 (25 bp)
GTGTCAGCGTGAGCATGTAGCTAAA
LOC_Os06g07030
Os.4804.1.S1_at--597--4971Chr06:3337051..3337075 (25 bp)
GCATGTAGCTAAAAGCAAGACGGCT
LOC_Os06g07030
Os.4804.1.S1_at--680--2731Chr06:3337063..3337087 (25 bp)
AAGCAAGACGGCTATGTACCTCACC
LOC_Os06g07030
Os.4804.1.S1_at--1003--9311Chr06:3337092..3337116 (25 bp)
TCGCTTAAGCGTTTGTTTGTAAAGA
LOC_Os06g07030
Os.4804.1.S1_at--559--9831Chr06:3337111..3337135 (25 bp)
TAAAGAGAAGATACCCAGCAAGCAA
LOC_Os06g07030
Os.4804.1.S1_at--864--1351Chr06:3337114..3337138 (25 bp)
AGAGAAGATACCCAGCAAGCAAGAC
LOC_Os06g07030
Os.4804.1.S1_at--572--5351Chr06:3337117..3337141 (25 bp)
GAAGATACCCAGCAAGCAAGACAAA
LOC_Os06g07030
Target Sequence 
GCAAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAGGAGCGTGCGTGTCAGCGTGAGC
ATGTAGCTAAAAGCAAGACGGCTATGTACCTCACCCTTTTCGCTTAAGCGTTTGTTTGTAAAGAGAAGATACCCAGCAAG
CAAGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis