Browse Element(s) Details


Os.4208.1.S1_at

Description gb:AK058497.1
DB_XREF= gi:32968515
TID=Os.4208.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C22458(C62866),C22459(C62866) correspond to a region of the predicted gene.~Similar to genomic sequence of Arabidopsis thaliana BAC F8A5, complete sequence.(AC002292) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E12, full insert sequence.
FL= gb:AK058497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0707011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07030Os.38447.1.S1_s_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07030Os.4804.1.S1_at11/116+3336100..3337157AP2 domain containing protein, expressed
LOC_Os06g07040Os.15798.1.S1_at11/116+3341465..3345319AUX/IAA family protein, expressed
LOC_Os06g07060OsAffx.22575.1.S1_at4/116+3354616..3355026hypothetical protein
LOC_Os06g07070Os.4208.1.S1_at11/116+3359543..3362524Protein kinase domain containing protein, expressed
LOC_Os06g07080Os.4209.1.S1_a_at11/116+3362870..3367262Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os06g07090Os.4210.1.S1_at10/116+3375577..3385458Adaptin N terminal region family protein, expressed
LOC_Os06g07090Os.45879.1.S1_at1/116+3375577..3385458Adaptin N terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4208.1.S1_at--1081--8811Chr06:3361939..3361963 (25 bp)
TGTTGGTTGGTCTGGCTTGCACACA
LOC_Os06g07070
Os.4208.1.S1_at--1005--8491Chr06:3361951..3361975 (25 bp)
TGGCTTGCACACACAGAGAACCTGA
LOC_Os06g07070
Os.4208.1.S1_at--274--5991Chr06:3361979..3362003 (25 bp)
GAGACCGACAATGCTCGAAGTTGTA
LOC_Os06g07070
Os.4208.1.S1_at--747--6031Chr06:3362028..3362052 (25 bp)
GAGATGCTTTCCAGGCTTGAAAATG
LOC_Os06g07070
Os.4208.1.S1_at--751--651Chr06:3362053..3362077 (25 bp)
ATGAATTGTTCAGGCCAGACTCGAC
LOC_Os06g07070
Os.4208.1.S1_at--1104--5691Chr06:3362070..3362094 (25 bp)
GACTCGACGGTGAGTTCCCATGGAA
LOC_Os06g07070
Os.4208.1.S1_at--323--5911Chr06:3362111..3362135 (25 bp)
GAGCTCGGACTGTGTGCCCAAGAAT
LOC_Os06g07070
Os.4208.1.S1_at--510--8671Chr06:3362260..3362284 (25 bp)
TGTGAAGGTTTCTCCTCTTTTTGGA
LOC_Os06g07070
Os.4208.1.S1_at--181--3511Chr06:3362354..3362378 (25 bp)
CATGGTGCTTTTTGTGTGCACTGGA
LOC_Os06g07070
Os.4208.1.S1_at--614--9871Chr06:3362392..3362416 (25 bp)
TACTTGGCCTGATGTTTGGGTATGA
LOC_Os06g07070
Os.4208.1.S1_at--1043--5531Chr06:3362492..3362516 (25 bp)
GAAACTTCTGCACAACACAGGAGTA
LOC_Os06g07070
Target Sequence 
TGTTGGTTGGTCTGGCTTGCACACACAGAGAACCTGAAAAGAGACCGACAATGCTCGAAGTTGTATCGATGCTGAAAGGT
GAATCTAAAGAGATGCTTTCCAGGCTTGAAAATGATGAATTGTTCAGGCCAGACTCGACGGTGAGTTCCCATGGAATGTC
AACACCAGAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCAAGAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAA
ATGTAGAGTCGCATTTTTTTTGTGGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACAGGCATTGTCAT
TTGTGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATACATGGTGCTTTTTTTGG
CAAAGAATTATTATACATGGTGCTTTTTGTGTGCACTGGATAGAAGATCCATATACTTGGCCTGATGTTTGGGTATGATT
GGTCATGTTGTCATATAAATTATTCTTTAATGCTGATATCTGGATGATTGAATTGTGTTTGTATCTTATGATTGAAACTT
CTGCACAACACAGGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis