Browse Element(s) Details


Os.33725.1.S1_at

Description gb:AK099356.1
DB_XREF= gi:32984565
TID=Os.33725.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana chromosome II BAC T20K24 genomic sequence, complete sequence.(AC002392) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040E19, full insert sequence.
FL= gb:AK099356.1 gb:AK059250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0716011/11metaxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07120Os.7478.1.S1_at11/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07120Os.7478.2.S1_x_at10/116+3404169..3406719undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07130Os.34965.2.S1_s_at11/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07130Os.7011.1.S2_x_at1/116+3407661..3417592Leucine Rich Repeat family protein, expressed
LOC_Os06g07140Os.4216.1.S1_a_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07140Os.4216.2.S1_x_at11/116+3419508..3420519Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07150OsAffx.22574.1.S1_at8/116+3424691..3425038hypothetical protein
LOC_Os06g07160Os.33725.1.S1_at11/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07160Os.51581.1.S1_at1/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07170NANA6+3432634..3433780hypothetical protein
LOC_Os06g07180OsAffx.27485.1.S1_at10/116+3436575..3437625expressed protein
LOC_Os06g07190Os.49094.1.S1_at8/116+3439121..3442076expressed protein
LOC_Os06g07200OsAffx.15295.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200Os.18952.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200OsAffx.15295.1.S1_x_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07210Os.4222.1.S1_at11/116+3448701..3453748Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220Os.4223.1.S1_s_at11/116+3454801..3455812transposon protein, putative, CACTA, En/Spm sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33725.1.S1_at--157--7031Chr06:3429906..3429930 (25 bp)
GTAAACTTTACCAAGCACCTCAAGG
LOC_Os06g07160
Os.33725.1.S1_at--261--5891Chr06:3430015..3430356 (25 bp)
GAGCGTCTTCTGGTCGGAGTTATAA
LOC_Os06g07160
Os.33725.1.S1_at--385--2331Chr06:3432083..3432107 (25 bp)
AAAGTATTTCCTTGCGACACAGCTC
LOC_Os06g07160
Os.33725.1.S1_at--450--2191Chr06:3432099..3432123 (25 bp)
ACACAGCTCGTTGCGGTTCTTCTAT
LOC_Os06g07160
Os.33725.1.S1_at--732--10571Chr06:3432118..3432142 (25 bp)
TTCTATTCCTATCGCTCATGGGTGG
LOC_Os06g07160
Os.33725.1.S1_at--770--131Chr06:3432190..3432214 (25 bp)
ATTAAATCCTCCCTTTGTTGTACTG
LOC_Os06g07160
Os.33725.1.S1_at--1122--6631Chr06:3432206..3432230 (25 bp)
GTTGTACTGCACGATTCTTTCTGAA
LOC_Os06g07160
Os.33725.1.S1_at--1136--2171Chr06:3432328..3432352 (25 bp)
ACACTGAGTTGGTCAGCAGCCGGCA
LOC_Os06g07160
Os.33725.1.S1_at--934--5071Chr06:3432343..3432367 (25 bp)
GCAGCCGGCAGTTCCATAGTTTTGG
LOC_Os06g07160
Os.33725.1.S1_at--894--3271Chr06:3432437..3432461 (25 bp)
CAAAGTAGTTGTGCCGAATGCCCTT
LOC_Os06g07160
Os.33725.1.S1_at--37--611Chr06:3432454..3432478 (25 bp)
ATGCCCTTTGCCCTGGAGATTTGCT
LOC_Os06g07160
Target Sequence 
GTAAACTTTACCAAGCACCTCAAGGTCCAATTACTGGAAGCTGNTTCTGATTCATCAGCAACAGGATTGGGATCAACTGA
TCCATCATCATCCTCTACACCCAGGAAAAGAGCGTCTTCTGGTCGGAGTTATAAGCCAAAACCCAGAGCTAAGAAGGAAC
GAACAGAGGAGGAAAAGAAGTTCAGGCGAAAAGCAAAGTATTTCCTTGCGACACAGCTCGTTGCGGTTCTTCTATTCCTA
TCGCTCATGGGTGGAGCCGATAGCTCAGAGCTAGACGATGAGGACGGTGTAGATTATGAAGATTAAATCCTCCCTTTGTT
GTACTGCACGATTCTTTCTGAAGTGTTAATTTGCCAAAGCACCGGTTGTGGNTGCTTGAAAATGNTTCTTCCCATGGNTT
AGTCAGAGAGATCGCATACTTCATCATATTGTAGTTAGCAATACACTGAGTTGGTCAGCAGCCGGCAGTTCCATAGTTTT
GGTACTTCAAAAGTAAAACATAATCTGTGGAATTTTGTATTGGTTTCGTTGGACGCAACTGTAAGCATATGCAAAGTAGT
TGTGCCGAATGCCCTTTGCCCTGGAGATTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis