Browse Element(s) Details

Os.4223.1.S1_s_at

Description

gb:AK103637.1
DB_XREF= gi:32988846
TID=Os.4223.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Zea mays PRP gene.(X60432) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033134F12, full insert sequence.
FL= gb:AK101305.1 gb:AK103637.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07220	11/11	transposon protein, putative, CACTA, En/Spm sub-class, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07160	Os.33725.1.S1_at	11/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07160	Os.51581.1.S1_at	1/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07170	NA	NA	6	+	3432634..3433780	hypothetical protein
LOC_Os06g07180	OsAffx.27485.1.S1_at	10/11	6	+	3436575..3437625	expressed protein
LOC_Os06g07190	Os.49094.1.S1_at	8/11	6	+	3439121..3442076	expressed protein
LOC_Os06g07200	OsAffx.15295.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	Os.18952.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	OsAffx.15295.1.S1_x_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07210	Os.4222.1.S1_at	11/11	6	+	3448701..3453748	Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220	Os.4223.1.S1_s_at	11/11	6	+	3454801..3455812	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g07230	Os.9247.2.S1_x_at	11/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230	Os.9247.1.S1_at	9/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07240	NA	NA	6	+	3467971..3468919	expressed protein
LOC_Os06g07250	Os.22995.1.S1_at	1/11	6	+	3469796..3474964	Protein GOS9, putative, expressed
LOC_Os06g07260	OsAffx.4749.1.S1_x_at	11/11	6	+	3476114..3476404	wall-associated kinase, putative
LOC_Os06g07260	OsAffx.4749.1.S1_at	11/11	6	+	3476114..3476404	wall-associated kinase, putative

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4223.1.S1_s_at--679--897	1	Chr06:3455259..3455283 (25 bp)	TGAACGCGTGCGTGGACGTGCTGGG	LOC_Os06g07220
Os.4223.1.S1_s_at--75--833	1	Chr06:3455232..3455256 (25 bp)	GGCTGATCCACCTGGTGATCGGGCA	LOC_Os06g07220
Os.4223.1.S1_s_at--1015--921	1	Chr06:3455226..3455250 (25 bp)	TCCACCTGGTGATCGGGCAGAAGGC	LOC_Os06g07220
Os.4223.1.S1_s_at--671--481	1	Chr06:3455030..3455054 (25 bp)	GCTCTACGGCGCCTGAACTGAACAA	LOC_Os06g07220
Os.4223.1.S1_s_at--495--937	1	Chr06:3454973..3454997 (25 bp)	TCGTCAATGGCGGAGGCTACTATAC	LOC_Os06g07220
Os.4223.1.S1_s_at--796--847	1	Chr06:3454966..3454990 (25 bp)	TGGCGGAGGCTACTATACTACACCC	LOC_Os06g07220
Os.4223.1.S1_s_at--199--33	1	Chr06:3454952..3454976 (25 bp)	ATACTACACCCTCGCTAGCTAGCTA	LOC_Os06g07220
Os.4223.1.S1_s_at--110--1001	1	Chr06:3454937..3454961 (25 bp)	TAGCTAGCTATACTGTGCTACCTTT	LOC_Os06g07220
Os.4223.1.S1_s_at--259--1019	1	Chr06:3454929..3454953 (25 bp)	TATACTGTGCTACCTTTACTCTCTC	LOC_Os06g07220
Os.4223.1.S1_s_at--558--1033	1	Chr06:3454915..3454939 (25 bp)	TTTACTCTCTCGATCGTACTCGTGT	LOC_Os06g07220
Os.4223.1.S1_s_at--871--21	1	Chr06:3454885..3454909 (25 bp)	ATTTGTGTTGTATTAATGTACTACC	LOC_Os06g07220

Target Sequence

TGAACGCGTGCGTGGACGTGCTGGGGGGGCTGATCCACCTGGTGATCGGGCAGAAGGCGAGGGCGAAGTGCTGCCCGCTG
GTGCAGGGCGTGGCGGACCTGGACGCCGCGCTCTGCCTCTGCACCACCATCCGCGCGCGCCTCCTCAACATCAACATCTA
CCTCCCCGTCGCGCTCGAGCTGCTCATCACCTGCGGCAAGCACCCGCCTCCCGGCTTCAAGTGCCCCCCGCTCTACGGCG
CCTGAACTGAACAAACNAAGCAGCAGCTAGCAAAGCTTCGTCGTCGTCGTCAATGGCGGAGGCTACTATACTACACCCTC
GCTAGCTAGCTATACTGTGCTACCTTTACTCTCTCGATCGTACTCGTGTCTGCNATTTGTGTTGTATTAATGTACTACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis