Browse Element(s) Details

Os.9247.2.S1_x_at

Description

gb:NM_185674.1
DB_XREF= gi:34898433
TID=Os.9247.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C98382(C2985),D22444(C11129) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana APK1 gene for protein tyrosine-serine-threonine kinase.(D12522) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) ESTs C98382(C2985),D22444(C11129) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana APK1 gene for protein tyrosine-serine-threonine kinase.(D12522) (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07230	11/11	Protein kinase APK1B, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07180	OsAffx.27485.1.S1_at	10/11	6	+	3436575..3437625	expressed protein
LOC_Os06g07190	Os.49094.1.S1_at	8/11	6	+	3439121..3442076	expressed protein
LOC_Os06g07200	OsAffx.15295.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	Os.18952.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	OsAffx.15295.1.S1_x_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07210	Os.4222.1.S1_at	11/11	6	+	3448701..3453748	Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220	Os.4223.1.S1_s_at	11/11	6	+	3454801..3455812	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g07230	Os.9247.2.S1_x_at	11/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230	Os.9247.1.S1_at	9/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07240	NA	NA	6	+	3467971..3468919	expressed protein
LOC_Os06g07250	Os.22995.1.S1_at	1/11	6	+	3469796..3474964	Protein GOS9, putative, expressed
LOC_Os06g07260	OsAffx.4749.1.S1_x_at	11/11	6	+	3476114..3476404	wall-associated kinase, putative
LOC_Os06g07260	OsAffx.4749.1.S1_at	11/11	6	+	3476114..3476404	wall-associated kinase, putative
LOC_Os06g07270	OsAffx.27487.1.S1_at	10/11	6	+	3482626..3483957	hypothetical protein
LOC_Os06g07270	OsAffx.16226.1.S1_at	4/11	6	+	3482626..3483957	hypothetical protein
LOC_Os06g07280	OsAffx.27488.1.S1_at	11/11	6	+	3488967..3489803	Tubulin beta-1 chain, putative

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Gene Ontology Classification

GO id	Type	Name
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9247.2.S1_x_at--734--163	1	Chr06:3461067..3461091 (25 bp)	AGCGAAAGCTGGTCCTCAAGGCGAT	LOC_Os06g07230
Os.9247.2.S1_x_at--257--241	1	Chr06:3461042..3461066 (25 bp)	AAAACTCATGTCTCTACACGGGTTG	LOC_Os06g07230
Os.9247.2.S1_x_at--536--697	1	Chr06:3461014..3461038 (25 bp)	GTACCTATGGTTATGCTGCACCCGA	LOC_Os06g07230
Os.9247.2.S1_x_at--880--865	1	Chr06:3460277..3460301 (25 bp)	TGGGCGAGGCCGTATCTAAGTGATC	LOC_Os06g07230
Os.9247.2.S1_x_at--814--109	1	Chr06:3460259..3460283 (25 bp)	AGTGATCGGCGAAGGCTCTACCAGC	LOC_Os06g07230
Os.9247.2.S1_x_at--686--531	1	Chr06:3460188..3460212 (25 bp)	GAAGGTTGCTCAGATCTGCTACCAC	LOC_Os06g07230
Os.9247.2.S1_x_at--35--535	1	Chr06:3460124..3460148 (25 bp)	GAAGTTGTCAAGCACCTGACGCCGT	LOC_Os06g07230
Os.9247.2.S1_x_at--560--385	1	Chr06:3460109..3460133 (25 bp)	CTGACGCCGTTGCAGGACCTAAATG	LOC_Os06g07230
Os.9247.2.S1_x_at--374--893	1	Chr06:3460086..3460110 (25 bp)	TGACATGGCGTCTGCATCATATAGA	LOC_Os06g07230
Os.9247.2.S1_x_at--766--29	1	Chr06:3460067..3460090 (24 bp)	ATAGACCTCGATCATCTCAGCGTGA	LOC_Os06g07230
Os.9247.2.S1_x_at--795--629	1	Chr06:3459600..3459624 (25 bp)	GATGATCAGCCGAACACTGTGTTTG	LOC_Os06g07230

Target Sequence

AGCGAAAGCTGGTCCTCAAGGCGATAAAACTCATGTCTCTACACGGGTTGTCGGTACCTATGGTTATGCTGCACCCGAGT
ATGTAATGACAGGACACTTGACATCCAAGAGCGATGTATATAGCTTCGGAGTAGTGTTACTCGAGATGTTAACCGGTAGA
CGATCAATGGACAAGAAGCGGCCTACTGGGGAGCAGAACCTAGTGGCATGGGCGAGGCCGTATCTAAGTGATCGGCGAAG
GCTCTACCAGCTCGTAGATCCTCGCTTGGGGCTGAACTATTCAGTAAGAGGGGTGCAGAAGGTTGCTCAGATCTGCTACC
ACTGCCTCAGCCGTGACACCAAGTCTCGTCCGACAATGGATGAAGTTGTCAAGCACCTGACGCCGTTGCAGGACCTAAAT
GACATGGCGTCTGCATCATATAGACCTCGATCATCTCAGCGTGATGATCAGCCGAACACTGTGTTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis