Browse Element(s) Details


Os.22995.1.S1_at

Description gb:CB096301
DB_XREF= gi:27920493
DB_XREF=AF53-Rpf_02_O11_T7_048.ab1
CLONE=C0000731
TID=Os.22995.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22995 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173402.1 (A.thaliana) DYW7 protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g073005/11Protein GOS9, putative
LOC_Os06g072501/11Protein GOS9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07270OsAffx.27487.1.S1_at10/116+3482626..3483957hypothetical protein
LOC_Os06g07270OsAffx.16226.1.S1_at4/116+3482626..3483957hypothetical protein
LOC_Os06g07280OsAffx.27488.1.S1_at11/116+3488967..3489803Tubulin beta-1 chain, putative
LOC_Os06g07290NANA6+3493534..3499016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07300Os.22995.1.S1_at5/116+3503058..3507741Protein GOS9, putative
LOC_Os06g07300Os.11426.2.S1_x_at1/116+3503058..3507741Protein GOS9, putative
LOC_Os06g07320NANA6+3508676..3513721retrotransposon protein, putative, unclassified
LOC_Os06g07330OsAffx.15296.1.S1_at11/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4918.1.S1_at2/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4749.1.S1_x_at1/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07340OsAffx.27489.1.S1_at11/116+3531649..3532765hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22995.1.S1_at--899--8771Chr06:3507560..3507584 (25 bp)
TCTCCGGAACATTTACCAACGTCGT
LOC_Os06g07300
Os.22995.1.S1_at--773--2531Chr06:3507577..3507601 (25 bp)
AACGTCGTGACAAACCTTCAAATTG
LOC_Os06g07300
Os.22995.1.S1_at--160--7732Chr06:3507637..3507661 (25 bp)
GGTGGAACTGCTTTTAGCCTCCCGC
LOC_Os06g07300
Os.22995.1.S1_at--1068--7451Chr06:3507674..3507698 (25 bp)
GTGTGGTTGGTTTCTTTGGTCGCTC
LOC_Os06g07300
Os.22995.1.S1_at--344--8391Chr06:3507700..3507724 (25 bp)
GGCGCACTTGTGGACTCTATCGGAG
LOC_Os06g07300
Os.22995.1.S1_at--951--7312Chr06:3507791..3507815 (25 bp)
GTGCTCATGATAAATTCACCCCTAA
NONE
Os.22995.1.S1_at--511--2831Chr06:3507815..3507839 (25 bp)
AAGTCTTGTTTGTATAATCCCTCAC
NONE
Os.22995.1.S1_at--6--671Chr06:3507906..3507930 (25 bp)
ATGAATCGCACAAGACCTAAGTCCT
NONE
Os.22995.1.S1_at--1008--5671Chr06:3507937..3507961 (25 bp)
GACATTTCTTTCAATCACTCTATAT
NONE
Os.22995.1.S1_at--1073--4991Chr06:3507981..3508005 (25 bp)
GCATGTGTATGTGGCCTAGGCCCAA
NONE
Os.22995.1.S1_at--780--7411Chr06:3508060..3508084 (25 bp)
GTGTTGTGCTACATTCGCTACATAT
NONE
Target Sequence 
TCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGACAAGGTGGT
GGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTAT
CGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATG
ATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTNTACA
CCTCCCCTCCAATCTCTCTCTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTAT
ATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGNTTTACCTCACTAGTGCCCCNGTTATGTTTC
TCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis