Browse Element(s) Details


Os.11426.2.S1_x_at

Description gb:NM_188273.1
DB_XREF= gi:34903629
GEN=B1046G12.22
TID=Os.11426.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1046G12.22 (B1046G12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1046G12.22 (B1046G12.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g360802/11Cytochrome P450 family protein, expressed
LOC_Os03g106701/11hypothetical protein
LOC_Os06g073001/11Protein GOS9, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed
LOC_Os09g36120Os.54437.1.S1_at11/119+20797439..20798055expressed protein
LOC_Os09g36130Os.57099.1.S1_at10/119+20798680..20802439expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11426.2.S1_x_at--1153--8875Chr04:34813180..34813203 (24 bp)
TGAGGACGTAGCAGCCGGAGCCCTC
NONE
Os.11426.2.S1_x_at--756--7292Chr03:5432724..5432745 (22 bp)
GTGCGCGACGGCAGCGGCGAGGCTA
LOC_Os03g10670
Os.11426.2.S1_x_at--741--3931Chr01:5395286..5395311 (25 bp)
CGGCGAGGCTACTGCTGACGACGAC
NONE
Os.11426.2.S1_x_at--209--6211Chr01:5395282..5395306 (25 bp)
GAGGCTACTGCTGACGACGACGTCT
NONE
Os.11426.2.S1_x_at--985--911Chr01:5395281..5395305 (25 bp)
AGGCTACTGCTGACGACGACGTCTA
NONE
Os.11426.2.S1_x_at--613--8311Chr01:5395280..5395304 (25 bp)
GGCTACTGCTGACGACGACGTCTAC
NONE
Os.11426.2.S1_x_at--900--9911Chr01:5395277..5395301 (25 bp)
TACTGCTGACGACGACGTCTACGTC
NONE
Os.11426.2.S1_x_at--993--9111Chr01:5395274..5395298 (25 bp)
TGCTGACGACGACGTCTACGTCTTC
NONE
Os.11426.2.S1_x_at--1129--5771Chr01:5395270..5395294 (25 bp)
GACGACGACGTCTACGTCTTCCTCA
NONE
Os.11426.2.S1_x_at--407--7692Chr09:20773901..20773925 (25 bp)
GGGTCAAGAACCGACGCCGTCGAAG
LOC_Os09g36080
Os.11426.2.S1_x_at--970--5433Chr09:20773908..20773932 (25 bp)
GAACCGACGCCGTCGAAGCGCCAAG
LOC_Os09g36080
Target Sequence 
TGAGGACGTAGCAGCCGGAGCCCTCGTGCGCGACGGCAGCGGCGAGGCTACTGCTGACGACGACGTCTACGTCTTCCTCA
CCGCCGTCGCGCTCCTCGCCGTCGTCGGCTACGGGGTCAAGAACCGACGCCGTCGAAGCGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11426.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis