Browse Element(s) Details


Os.57099.1.S1_at

Description gb:AK110919.1
DB_XREF= gi:32996128
TID=Os.57099.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C12, full insert sequence.
FL= gb:AK110919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3613010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed
LOC_Os09g36120Os.54437.1.S1_at11/119+20797439..20798055expressed protein
LOC_Os09g36130Os.57099.1.S1_at10/119+20798680..20802439expressed protein
LOC_Os09g36140Os.51862.1.S1_at10/119+20810885..20812689RNA recognition motif 2 family protein, expressed
LOC_Os09g36150NANA9+20826782..20828631retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57099.1.S1_at--873--2911Chr09:20799249..20799273 (25 bp)
AAGGAGGTTCTTATCAGCAGCGCAT
LOC_Os09g36130
Os.57099.1.S1_at--770--1511Chr09:20799234..20799258 (25 bp)
AGCAGCGCATACTCGTTGAATATCT
LOC_Os09g36130
Os.57099.1.S1_at--1026--7771Chr09:20799173..20799197 (25 bp)
GGTGCTTCAAGGACCAACCATATGA
LOC_Os09g36130
Os.57099.1.S1_at--606--7331Chr09:20799122..20799146 (25 bp)
GTGCAGGTTATCCAGTTCGATCATG
LOC_Os09g36130
Os.57099.1.S1_at--708--811Chr09:20799100..20799124 (25 bp)
ATGGTTTTGACGCATCACCTAGCAA
LOC_Os09g36130
Os.57099.1.S1_at--224--7311Chr09:20798891..20798915 (25 bp)
GTGCGTGATTTTCATTCCCCACTTT
LOC_Os09g36130
Os.57099.1.S1_at--231--8591Chr09:20798867..20798891 (25 bp)
TGGTCTTCATCTCGAATGGCCGATT
LOC_Os09g36130
Os.57099.1.S1_at--610--5291Chr09:20798854..20798878 (25 bp)
GAATGGCCGATTTTGCTGTTGGAAT
LOC_Os09g36130
Os.57099.1.S1_at--527--10791Chr09:20798827..20798851 (25 bp)
TTGATTTCTGTTCTGTCTGATTGAC
LOC_Os09g36130
Os.57099.1.S1_at--1148--3011Chr09:20798729..20798753 (25 bp)
AATGCTGAGCTTGACTTGTTACTGA
LOC_Os09g36130
Os.57099.1.S1_at--359--10471Chr09:20798680..20798704 (25 bp)
TTACTGATCCCTGCAACTGTTGATT
NONE
Target Sequence 
AAGGAGGTTCTTATCAGCAGCGCATACTCGTTGAATATCTAAAAGAGATACAGGCTAGAGCGGAGGAAGTTGTGAAGGTG
CTTCAAGGACCAACCATATGATGATGTCTGGTGGTCGATTTTAAACAGTGCAGGTTATCCAGTTCGATCATGGTTTTGAC
GCATCACCTAGCAAAAGCTTAGAAGGCGACAACAGACAACCTAACTAGTTGTCTGATTCAGGAACCCGAGATAAGCATAG
CGAGAAGAGAAACAGATCCAAATGTCCTAAAGGAGTGCGTGATTTTCATTCCCCACTTTGGTCTTCATCTCGAATGGCCG
ATTTTGCTGTTGGAATGTTTGATTTCTGTTCTGTCTGATTGACACTTGACACGAGTGAGCTTGACTAAGCTGTAGTAACA
TGTGAATCGGTTTTTGTTGTGTNAGNNGNGAAGGTTCAATGCTGAGCTTGACTTGTTACTGAGGTGCTTGTTGAACTCAT
TTTAAGTTACTGATCCCTGCAACTGTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis