Browse Element(s) Details


OsAffx.30148.1.S1_s_at

Description tigr:9637.m03035
TID=OsAffx.30148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3610011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed
LOC_Os09g36120Os.54437.1.S1_at11/119+20797439..20798055expressed protein
LOC_Os09g36130Os.57099.1.S1_at10/119+20798680..20802439expressed protein
LOC_Os09g36140Os.51862.1.S1_at10/119+20810885..20812689RNA recognition motif 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30148.1.S1_s_at--1007--8151Chr09:20787141..20787165 (25 bp)
GGAAAACCATCGGGCACGGCGCTTC
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--584--8151Chr09:20787175..20787199 (25 bp)
GGAAATCCTGCAAGGGCTGCCTCTA
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--321--9531Chr09:20787196..20787220 (25 bp)
TCTACTACTCGTCCATGCTCAGATC
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--826--4331Chr09:20787208..20787232 (25 bp)
CCATGCTCAGATCCCGCGGATTCAA
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--211--1691Chr09:20787455..20787475 (21 bp)
CCCAAGTCCCAAGCTACGTGGTGGA
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--1031--4371Chr09:20787459..20787483 (25 bp)
CCAAGCTACGTGGTGGACGAGCCCA
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--44--4151Chr09:20787536..20787560 (25 bp)
CGCTGGTTACTCCATGTTTGTGGTG
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--913--7471Chr09:20787555..20787579 (25 bp)
GTGGTGGATAACAAAGACGGCCGAA
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--510--4931Chr09:20788518..20788537 (20 bp)
GCTTGAGCTATTGGTGGACAGCAGA
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--271--9671Chr09:20788553..20788577 (25 bp)
TCACCAAATAATGAGCCTGCTACTG
LOC_Os09g36100
OsAffx.30148.1.S1_s_at--752--4471Chr09:20788567..20788591 (25 bp)
GCCTGCTACTGCCTCTTATAGAAAG
LOC_Os09g36100
Target Sequence 
GGAAAACCATCGGGCACGGCGCTTCCGAGGAGGGGGAAATCCTGCAAGGGCTGCCTCTACTACTCGTCCATGCTCAGATC
CCGCGGATTCAACCCCGTCTGCGTGGGGATCCCGCGCTCCATCCCCCAAGTCCCAAGCTACGTGGTGGACGAGCCCAGAG
AAGAGGCGGCGGCGCAGGGGCATGATTTGAGGCAGTTCAAGTACGCCTGCGCTGGTTACTCCATGTTTGTGGTGGATAAC
AAAGACGGCCGAAGCGGCGAGAAGGAGGGCAAGACGTTGTTGCCATATTGCCAGGGGCTTGAGCTATTGGTGGACAGCAG
ATTGGTTGAGAAGAAATCACCAAATAATGAGCCTGCTACTGCCTCTTATAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30148.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis