Browse Element(s) Details


OsAffx.18006.1.S1_at

Description tigr:9637.m03036
TID=OsAffx.18006.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=subtilisin serine protease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3611011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed
LOC_Os09g36120Os.54437.1.S1_at11/119+20797439..20798055expressed protein
LOC_Os09g36130Os.57099.1.S1_at10/119+20798680..20802439expressed protein
LOC_Os09g36140Os.51862.1.S1_at10/119+20810885..20812689RNA recognition motif 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18006.1.S1_at--84--7831Chr09:20796634..20796730 (25 bp)
GGTCACGACAGCCAATGTTCATGAT
LOC_Os09g36110
OsAffx.18006.1.S1_at--401--8591Chr09:20796747..20796771 (25 bp)
TGGTATCAGAGGCAGCACCCTACAA
LOC_Os09g36110
OsAffx.18006.1.S1_at--210--8031Chr09:20796794..20796818 (25 bp)
GGAGGTGGCCATGTCAATCCAAACA
LOC_Os09g36110
OsAffx.18006.1.S1_at--773--5091Chr09:20796826..20796850 (25 bp)
GCACCCCGGTCTTGTGTATGACATG
LOC_Os09g36110
OsAffx.18006.1.S1_at--51--6091Chr09:20796852..20796876 (25 bp)
GAGTATCTGACTACATGCGCTTCCT
LOC_Os09g36110
OsAffx.18006.1.S1_at--528--10671Chr09:20796872..20796896 (25 bp)
TTCCTTTGCTCCATGGGTTACAACA
LOC_Os09g36110
OsAffx.18006.1.S1_at--375--3931Chr09:20797036..20797060 (25 bp)
CGGCCCTGCTTTGTCGAAGTACAGA
LOC_Os09g36110
OsAffx.18006.1.S1_at--281--8751Chr09:20797066..20797090 (25 bp)
TGTAGAAGCTCCTCCAGGCGTGGAC
LOC_Os09g36110
OsAffx.18006.1.S1_at--1077--10491Chr09:20797145..20797169 (25 bp)
TTCAAGGTGACATTCCAGGCCAAAT
LOC_Os09g36110
OsAffx.18006.1.S1_at--336--2151Chr09:20797188..20797212 (25 bp)
ACACCTTCGGGAGCCTGACATGGGA
LOC_Os09g36110
OsAffx.18006.1.S1_at--375--2171Chr09:20797224..20797248 (25 bp)
ACACGGTGAGGATCCCTTTGGTGGT
LOC_Os09g36110
Target Sequence 
GGTCACGACAGCCAATGTTCATGATGCATATGGGTTTGAAATGGTATCAGAGGCAGCACCCTACAATGACGCAAATCCAT
TTGATTATGGAGGTGGCCATGTCAATCCAAACAGAGCTGCGCACCCCGGTCTTGTGTATGACATGGGAGTATCTGACTAC
ATGCGCTTCCTTTGCTCCATGGGTTACAACACCTCAGCCATCAGCTCCATGACTCAACAGCAAACAACATGTCAACATAC
GCCAAAATCGCAGTTAAACCTGAATGTTCCATCCATCACCATCCCTGAACTGAGGGGAAAATTGACGGTGTCAAGAACGG
TCACCAACGTCGGCCCTGCTTTGTCGAAGTACAGAGCTCGTGTAGAAGCTCCTCCAGGCGTGGACGTCACCGTTAGCCCC
TCGCTCCTAACCTTCAACTCAACCGTCAGAAAGTTGCCATTCAAGGTGACATTCCAGGCCAAATTGAAGGTGAAAGGGAG
GTACACCTTCGGGAGCCTGACATGGGAGGATGGCACTCACACGGTGAGGATCCCTTTGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis