Browse Element(s) Details


Os.47993.1.S1_x_at

Description gb:AK058211.1
DB_XREF= gi:32968229
TID=Os.47993.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-C06, full insert sequence.
FL= gb:AK058211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3610011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed
LOC_Os09g36120Os.54437.1.S1_at11/119+20797439..20798055expressed protein
LOC_Os09g36130Os.57099.1.S1_at10/119+20798680..20802439expressed protein
LOC_Os09g36140Os.51862.1.S1_at10/119+20810885..20812689RNA recognition motif 2 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47993.1.S1_x_at--132--6611Chr09:20789371..20789395 (25 bp)
GATTGGTCGCTTCAGGCGTTGCAAA
LOC_Os09g36100
Os.47993.1.S1_x_at--93--311Chr09:20789430..20789454 (25 bp)
AACGTCGCAGACATACTTTACCCGG
LOC_Os09g36100
Os.47993.1.S1_x_at--573--10651Chr09:20789487..20789511 (25 bp)
TTGCCCGTCGTTGTTCAGTTGGAGA
LOC_Os09g36100
Os.47993.1.S1_x_at--375--2231Chr09:20789520..20789544 (25 bp)
AAATTGCTACCGACATGAGATACAG
LOC_Os09g36100
Os.47993.1.S1_x_at--86--4271Chr09:20789552..20789576 (25 bp)
CCTGACGCCATATCCTTACAAATTA
LOC_Os09g36100
Os.47993.1.S1_x_at--944--2091Chr09:20789585..20789609 (25 bp)
ACATCCCTATTGAGGAGTGGCCCGA
LOC_Os09g36100
Os.47993.1.S1_x_at--587--8411Chr09:20789603..20789627 (25 bp)
GGCCCGAGCCACATTGAGCAAAATT
LOC_Os09g36100
Os.47993.1.S1_x_at--930--3171Chr09:20789624..20789648 (25 bp)
AATTGGACGGTTTCTTGGATGCTCT
LOC_Os09g36100
Os.47993.1.S1_x_at--252--7991Chr09:20789640..20789664 (25 bp)
GGATGCTCTTAATTCTTTCCATTGT
LOC_Os09g36100
Os.47993.1.S1_x_at--1069--10671Chr09:20789656..20789680 (25 bp)
TTCCATTGTACTTGCATCGTTTTTG
LOC_Os09g36100
Os.47993.1.S1_x_at--656--2991Chr09:20789705..20789729 (25 bp)
AATGTTGTACATGCGACAGCCTTCC
LOC_Os09g36100
Target Sequence 
GATTGGTCGCTTCAGGCGTTGCAAAGAATCTAAACAAGACAGCTATTTACATCAAGGAAAACGTCGCAGACATACTTTAC
CCGGACCGTCGACCACCTAAATAGGAACTATGCTGCTTGCCCGTCGTTGTTCAGTTGGAGATCTGAAGAAAATTGCTACC
GACATGAGATACAGAAGACTACCTGACGCCATATCCTTACAAATTACAATAACCACATCCCTATTGAGGAGTGGCCCGAG
CCACATTGAGCAAAATTGGACGGTTTCTTGGATGCTCTTAATTCTTTCCATTGTACTTGCATCGTTTTTGTAATGTTATG
GCCAGATACAAACTAATGTTGTACATGCGACAGCCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47993.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis