Browse Element(s) Details


Os.54437.1.S1_at

Description gb:AK105162.1
DB_XREF= gi:32990371
TID=Os.54437.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D01, full insert sequence.
FL= gb:AK105162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3612011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein
LOC_Os09g36110OsAffx.18006.1.S1_at11/119+20793975..20797285Subtilisin N-terminal Region family protein, expressed
LOC_Os09g36120Os.54437.1.S1_at11/119+20797439..20798055expressed protein
LOC_Os09g36130Os.57099.1.S1_at10/119+20798680..20802439expressed protein
LOC_Os09g36140Os.51862.1.S1_at10/119+20810885..20812689RNA recognition motif 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54437.1.S1_at--319--9151Chr09:20797795..20797819 (25 bp)
TGCGTCCGCTGCGTCTGGGACGTCT
LOC_Os09g36120
Os.54437.1.S1_at--381--5911Chr09:20797762..20797786 (25 bp)
GAGCTCGACGCCTACAATAAGGCTC
LOC_Os09g36120
Os.54437.1.S1_at--37--4611Chr09:20797689..20797713 (25 bp)
GCGACGGCGCCAAATCATGAGGCGA
LOC_Os09g36120
Os.54437.1.S1_at--1144--3051Chr09:20797677..20797701 (25 bp)
AATCATGAGGCGAATCAGGATTCAG
LOC_Os09g36120
Os.54437.1.S1_at--841--9631Chr09:20797656..20797680 (25 bp)
TCAGGAGTTCTGAGGACGACTTGCA
LOC_Os09g36120
Os.54437.1.S1_at--513--5791Chr09:20797642..20797666 (25 bp)
GACGACTTGCAGTATGCGTCCCTTC
LOC_Os09g36120
Os.54437.1.S1_at--98--8671Chr09:20797573..20797597 (25 bp)
TGTGGTACTCCTACCAGCTAGTAGT
LOC_Os09g36120
Os.54437.1.S1_at--144--2091Chr09:20797519..20797543 (25 bp)
ACATTTGTGTTATCTCATTGTGTAT
LOC_Os09g36120
Os.54437.1.S1_at--811--7431Chr09:20797500..20797524 (25 bp)
GTGTATGCTGCAATTTGTACTAGAG
LOC_Os09g36120
Os.54437.1.S1_at--341--8771Chr09:20797466..20797490 (25 bp)
TGTTGTTCCAACGAAAAATTCCCTG
LOC_Os09g36120
Os.54437.1.S1_at--717--2451Chr09:20797452..20797476 (25 bp)
AAAATTCCCTGATTACATACAGAGA
LOC_Os09g36120
Target Sequence 
TGCGTCCGCTGCGTCTGGGACGTCTACTACGACGAGCTCGACGCCTACAATAAGGCTCTCGCCGCCCACTCCTCGTCGGC
ATCCTCCGGCAGCAAGCCCGCTACCAGCGACGGCGCCAAATCATGAGGCGAATCAGGATTCAGGAGTTCTGAGGACGACT
TGCAGTATGCGTCCCTTCCTCTCTTTTCATTTTTTTTCCCCTTCCCCAAATCGGGGTCTTGGTGTGGTACTCCTACCAGC
TAGTAGTATTAAAATTACTCGTTTGATTATAGTGAAACATTTGTGTTATCTCATTGTGTATGCTGCAATTTGTACTAGAG
TGGAATGGTTGTTGTTCCAACGAAAAATTCCCTGATTACATACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis