Browse Element(s) Details


Os.54812.1.S1_at

Description gb:AK106815.1
DB_XREF= gi:32992024
TID=Os.54812.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D02, full insert sequence.
FL= gb:AK106815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3606011/11Endoglucanase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36100Os.11928.1.S1_at11/119+20787061..20789982expressed protein
LOC_Os09g36100Os.47993.1.S1_x_at11/119+20787061..20789982expressed protein
LOC_Os09g36100OsAffx.30148.1.S1_s_at11/119+20787061..20789982expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54812.1.S1_at--1080--2151Chr09:20767138..20767162 (25 bp)
ACACCATCGAGGATCATCGTTGCCT
LOC_Os09g36060
Os.54812.1.S1_at--732--9371Chr09:20767154..20767178 (25 bp)
TCGTTGCCTTCGATCAAGAGCCATC
LOC_Os09g36060
Os.54812.1.S1_at--720--5091Chr09:20767203..20767227 (25 bp)
GCACGCCTTACTACAATTCATCTAG
LOC_Os09g36060
Os.54812.1.S1_at--724--3231Chr09:20767236..20767260 (25 bp)
CAAACCCGTTAATTGGCGCAGTTGT
LOC_Os09g36060
Os.54812.1.S1_at--599--6311Chr09:20767292..20767316 (25 bp)
GATGACCGTGCCGATTTCAGGAAAT
LOC_Os09g36060
Os.54812.1.S1_at--574--8151Chr09:20767311..20767335 (25 bp)
GGAAATCTGAACCAACTACCTACAT
LOC_Os09g36060
Os.54812.1.S1_at--822--2011Chr09:20767325..20767349 (25 bp)
ACTACCTACATCAATGCTCCATTGG
LOC_Os09g36060
Os.54812.1.S1_at--690--6931Chr09:20767349..20767373 (25 bp)
GTAGGAGTTCTTGCTTACCTTGTTG
LOC_Os09g36060
Os.54812.1.S1_at--1041--9971Chr09:20767364..20767388 (25 bp)
TACCTTGTTGGCAATCCTGATCCAG
LOC_Os09g36060
Os.54812.1.S1_at--1098--871Chr09:20767387..20767411 (25 bp)
AGGCCAAGGCCATGTCAGGCATTGA
LOC_Os09g36060
Os.54812.1.S1_at--178--1311Chr09:20767493..20767517 (25 bp)
AGATGGCACTGCCTATTCATAGGAT
LOC_Os09g36060
Target Sequence 
ACACCATCGAGGATCATCGTTGCCTTCGATCAAGAGCCATCCCCAGCGCATTGCGTGCAACGACGGCACGCCTTACTACA
ATTCATCTAGCCCGAACCCAAACCCGTTAATTGGCGCAGTTGTTGGGGGGCCTGGGGAGGATGATGTTTATGAGGATGAC
CGTGCCGATTTCAGGAAATCTGAACCAACTACCTACATCAATGCTCCATTGGTAGGAGTTCTTGCTTACCTTGTTGGCAA
TCCTGATCCAGGCCAAGGCCATGTCAGGCATTGAGATTGAATAATTTGGCATCTAGATATAGATGAGGGACAGAAGTTAT
AAATAGGGGAAAATGTAAGAAGTAGGTTTGTGTTAAGATGGCACTGCCTATTCATAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis