Browse Element(s) Details


OsAffx.31478.1.S1_at

Description tigr:9637.m03027
TID=OsAffx.31478.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161566 SNF8 like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3602011/11EAP30 family protein, expressed
LOC_Os11g447907/11EAP30 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35960Os.52975.1.S1_at11/119+20715932..20720655RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os09g35970Os.17852.1.S1_at10/119+20724416..207274876-phosphogluconolactonase family protein, expressed
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31478.1.S1_at--1069--1831Chr09:20746700..20746814 (25 bp)
ACGCAGCGGCTACTCGTGACCAATT
LOC_Os09g36020
OsAffx.31478.1.S1_at--192--1991Chr09:20746689..20746803 (25 bp)
ACTCGTGACCAATTCCGGCTGGTTG
LOC_Os09g36020
OsAffx.31478.1.S1_at--100--2452Chr11:26584514..26584538 (25 bp)
AAAATGTGGCCAAGGTCAGGACCGA
NONE
OsAffx.31478.1.S1_at--524--1031Chr09:20746649..20746673 (25 bp)
AGGTCAGGACCGATGTCATGAAGGA
LOC_Os09g36020
OsAffx.31478.1.S1_at--765--9692Chr11:26598980..26599004 (25 bp)
TCACAATAGAGCTCAAATGGCACAG
LOC_Os11g44790
OsAffx.31478.1.S1_at--1056--832Chr11:26598996..26599020 (25 bp)
ATGGCACAGCATATTCCAACTCTTA
LOC_Os11g44790
OsAffx.31478.1.S1_at--135--3312Chr11:26599678..26599702 (25 bp)
CACAATGGGATACTTGAGCTAGCTC
LOC_Os11g44790
OsAffx.31478.1.S1_at--543--8912Chr11:26599692..26600021 (25 bp)
TGAGCTAGCTCAGGCTGAAGGTTTT
LOC_Os11g44790
OsAffx.31478.1.S1_at--527--2312Chr11:26600045..26600069 (25 bp)
AAAGTTCTCGTGGTCAACTGGCCGT
LOC_Os11g44790
OsAffx.31478.1.S1_at--257--3312Chr11:26600398..26600422 (25 bp)
CACAGGGATGGCAAGCGCAGATACT
LOC_Os11g44790
OsAffx.31478.1.S1_at--205--5172Chr11:26600408..26600432 (25 bp)
GCAAGCGCAGATACTGGTTCCCGTG
LOC_Os11g44790
Target Sequence 
ACGCAGCGGCTACTCGTGACCAATTCCGGCTGGTTGGGGAAAATGTGGCCAAGGTCAGGACCGATGTCATGAAGGAGCAG
CTTGCGACGNTNNNNANNNNNNNNGAANAANNTNNNNGNNNNNNNAAGGTGNTCACAATAGAGCTCAAATGGCACAGCAT
ATTCCAACTCTTANGTAACTTTGTGTANNTGGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAAGAAAAAGCTTG
TNCGTTCTGTTCCTACAGAACTGAATAAAGATCACAATGGGATACTTGAGCTAGCTCAGGCTGAAGGTTTTGTCACNGTA
GANCAAGTCNAGAGAAAGTTCTCGTGGTCAACTGGCCGTGCCATNGANGTCCTTGAAACTTTGCTCAAGGAAGGGCTTGC
NATGATCGACGATGGGCACAGGGATGGCAAGCGCAGATACTGGTTCCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis