Browse Element(s) Details


OsAffx.6490.1.S1_at

Description tigr:9637.m03029
TID=OsAffx.6490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3605011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed
LOC_Os09g36090Os.13470.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090OsAffx.30147.1.S1_at11/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.52012.1.S1_x_at10/119+20777988..20786312Plus-3 domain containing protein, expressed
LOC_Os09g36090Os.46045.2.S1_x_at1/119+20777988..20786312Plus-3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6490.1.S1_at--36--4711Chr09:20756574..20756598 (25 bp)
GCGGCGACAAGATCGCGGCGGACAT
LOC_Os09g36050
OsAffx.6490.1.S1_at--200--10651Chr09:20756636..20756660 (25 bp)
TTCGCCTGGTCCAAGGGTGCCATGG
LOC_Os09g36050
OsAffx.6490.1.S1_at--119--3491Chr09:20756641..20756665 (25 bp)
CTGGTCCAAGGGTGCCATGGCGTTC
LOC_Os09g36050
OsAffx.6490.1.S1_at--227--9111Chr09:20756694..20756718 (25 bp)
TGCTCCTGTGCCTGGGCGTGGCTGG
LOC_Os09g36050
OsAffx.6490.1.S1_at--892--4091Chr09:20756749..20756773 (25 bp)
CGACGGCAAGAACGCGGTGGTTGGG
LOC_Os09g36050
OsAffx.6490.1.S1_at--502--3831Chr09:20756777..20756801 (25 bp)
CTGCTCGTGCTAGCGATGACTGCAG
LOC_Os09g36050
OsAffx.6490.1.S1_at--445--4791Chr09:20756779..20756803 (25 bp)
GCTCGTGCTAGCGATGACTGCAGTG
LOC_Os09g36050
OsAffx.6490.1.S1_at--216--4011Chr09:20756782..20756806 (25 bp)
CGTGCTAGCGATGACTGCAGTGGTA
LOC_Os09g36050
OsAffx.6490.1.S1_at--957--3711Chr09:20756786..20756810 (25 bp)
CTAGCGATGACTGCAGTGGTAGCCA
LOC_Os09g36050
OsAffx.6490.1.S1_at--272--9931Chr09:20756805..20756829 (25 bp)
TAGCCAGGGTTTGTGAGTACGAGCG
LOC_Os09g36050
OsAffx.6490.1.S1_at--408--6351Chr09:20756842..20756866 (25 bp)
GATGCGCAGGTTGCAGGCGCGAATT
LOC_Os09g36050
Target Sequence 
GCGGCGACAAGATCGCGGCGGACATCGCCGCCGCCGGGACGACGTCCCGCCCGAGCTCGGGGTTCGCCTGGTCCAAGGGT
GCCATGGCGTTCGCGGCGTTCGACGTCGTCGTGGGCGCGCTGCTCCTGTGCCTGGGCGTGGCTGGCATCCTCTCCGCCGG
CGAACACCACCACGGCGACGGCAAGAACGCGGTGGTTGGGGGCCTGCTCGTGCTAGCGATGACTGCAGTGGTAGCCAGGG
TTTGTGAGTACGAGCGGAGGCGGGGAAAGATGCGCAGGTTGCAGGCGCGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis