Browse Element(s) Details


OsAffx.18003.1.S1_at

Description tigr:9637.m03025
TID=OsAffx.18003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3599011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35960Os.52975.1.S1_at11/119+20715932..20720655RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os09g35970Os.17852.1.S1_at10/119+20724416..207274876-phosphogluconolactonase family protein, expressed
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18003.1.S1_at--792--2751Chr09:20737192..20737216 (25 bp)
AAGACTGGAATCTGTAAAAGCTGCA
LOC_Os09g35990
OsAffx.18003.1.S1_at--680--3031Chr09:20737184..20737208 (25 bp)
AATCTGTAAAAGCTGCAGCAGTTTC
LOC_Os09g35990
OsAffx.18003.1.S1_at--520--3391Chr09:20737169..20737193 (25 bp)
CAGCAGTTTCCTCTGTAGTTGGTGT
LOC_Os09g35990
OsAffx.18003.1.S1_at--943--10291Chr09:20737163..20737187 (25 bp)
TTTCCTCTGTAGTTGGTGTTCTAGC
LOC_Os09g35990
OsAffx.18003.1.S1_at--89--7431Chr09:20737148..20737172 (25 bp)
GTGTTCTAGCTAGTTTACCCATATC
LOC_Os09g35990
OsAffx.18003.1.S1_at--473--1551Chr09:20737141..20737165 (25 bp)
AGCTAGTTTACCCATATCTTTTTAT
LOC_Os09g35990
OsAffx.18003.1.S1_at--357--9951Chr09:20737133..20737157 (25 bp)
TACCCATATCTTTTTATGAAGCCCA
LOC_Os09g35990
OsAffx.18003.1.S1_at--737--10111Chr09:20737119..20737143 (25 bp)
TATGAAGCCCATGATTTTCCACAAT
LOC_Os09g35990
OsAffx.18003.1.S1_at--662--4551Chr09:20737113..20737137 (25 bp)
GCCCATGATTTTCCACAATTATTTG
LOC_Os09g35990
OsAffx.18003.1.S1_at--47--3311Chr09:20737100..20737124 (25 bp)
CACAATTATTTGTTCAGTTGTCAGT
LOC_Os09g35990
OsAffx.18003.1.S1_at--929--7111Chr09:20737081..20737105 (25 bp)
GTCAGTTATTTTCATAAGTTGTGCT
LOC_Os09g35990
Target Sequence 
AAGACTGGAATCTGTAAAAGCTGCAGCAGTTTCCTCTGTAGTTGGTGTTCTAGCTAGTTTACCCATATCTTTTTATGAAG
CCCATGATTTTCCACAATTATTTGTTCAGTTGTCAGTTATTTTCATAAGTTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis