Browse Element(s) Details


Os.22608.1.S1_s_at

Description gb:AK121655.1
DB_XREF= gi:37991278
TID=Os.22608.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061N09, full insert sequence.
FL= gb:AK121655.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3603011/11Aldolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35970Os.17852.1.S1_at10/119+20724416..207274876-phosphogluconolactonase family protein, expressed
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein
LOC_Os09g36080Os.11426.2.S1_x_at2/119+20773802..20775749Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22608.1.S1_s_at--227--7251Chr09:20750383..20750407 (25 bp)
GTCCAGATGGGACCGCTCGACTTGT
LOC_Os09g36030
Os.22608.1.S1_s_at--111--8651Chr09:20750390..20750414 (25 bp)
TGGGACCGCTCGACTTGTCAGCCAG
LOC_Os09g36030
Os.22608.1.S1_s_at--1132--4891Chr09:20750512..20750536 (25 bp)
GCTTCAGATGGCAATGTCGCATATC
LOC_Os09g36030
Os.22608.1.S1_s_at--464--7231Chr09:20750527..20750551 (25 bp)
GTCGCATATCTAGGCGGATTCGCCA
LOC_Os09g36030
Os.22608.1.S1_s_at--1145--891Chr09:20750538..20750562 (25 bp)
AGGCGGATTCGCCATGCCGAACGAC
LOC_Os09g36030
Os.22608.1.S1_s_at--604--5451Chr09:20750556..20750580 (25 bp)
GAACGACCCGGCAGAGCAGCTCAAG
LOC_Os09g36030
Os.22608.1.S1_s_at--80--6791Chr09:20750588..20750612 (25 bp)
GTTACCACATGGTGTCTGGTGCAGT
LOC_Os09g36030
Os.22608.1.S1_s_at--474--6131Chr09:20750832..20750856 (25 bp)
GAGGTCTAAGTGGTTCCATTTTCCA
LOC_Os09g36030
Os.22608.1.S1_s_at--346--8771Chr09:20750876..20750900 (25 bp)
TGTTTAGTTGTCAGGTCGATTTTGA
LOC_Os09g36030
Os.22608.1.S1_s_at--1008--9611Chr09:20750906..20750930 (25 bp)
TCATGTTTGGGCATCTTAGGATTCC
LOC_Os09g36030
Os.22608.1.S1_s_at--16--8291Chr09:20750915..20750939 (25 bp)
GGCATCTTAGGATTCCCATTTGTAG
LOC_Os09g36030
Target Sequence 
GTCCAGATGGGACCGCTCGACTTGTCAGCCAGCATGGGGTACCTGTGGGACCCAGGGAACAGGAAGGTGCGAGCCAGGCT
GAGGGAGGCCGAGAAGAAGGTGTTGGATGCCAGGAAGAAGAATGTGACAGCTTCAGATGGCAATGTCGCATATCTAGGCG
GATTCGCCATGCCGAACGACCCGGCAGAGCAGCTCAAGCTGAGGGGTTACCACATGGTGTCTGGTGCAGTGGACATTGGG
ATGTTCCGGAAGGCGGCGTTGGAGGATGTCAAGCGGTTCAAGGAGGCAGTGATGGAAATCGGCGAGGAGGAAGGCGAGGA
GGACGATGAAAAGAAGGACAAGGAAGACGACGGGTACTGGAGTGAGTNAGCACTGAGCAGAGTTGAGCTGAAGATGATCA
AGGAACTGTGGTGATGGTGTCTTTTGTTTGTCTTCTGAATTCAGATTGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCC
TCTNGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTGAGANCATCATGTTTGGGCATCTTAGGATTCCCATTTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22608.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis