Browse Element(s) Details


Os.52276.1.S1_at

Description gb:AK066042.1
DB_XREF= gi:32976060
TID=Os.52276.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048L17, full insert sequence.
FL= gb:AK066042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3598011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35960Os.52975.1.S1_at11/119+20715932..20720655RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os09g35970Os.17852.1.S1_at10/119+20724416..207274876-phosphogluconolactonase family protein, expressed
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52276.1.S1_at--565--331Chr09:20731568..20731592 (25 bp)
ATACATTCTATCTGCTTAACGCTCC
LOC_Os09g35980
Os.52276.1.S1_at--1015--2271Chr09:20731530..20731554 (25 bp)
AAATGCATCACACTCCATATTGGGA
LOC_Os09g35980
Os.52276.1.S1_at--91--2331Chr09:20731484..20731508 (25 bp)
AAAGTCGATCTCTTGATGCCAATTT
LOC_Os09g35980
Os.52276.1.S1_at--210--10311Chr09:20731401..20731425 (25 bp)
TTTCTGGCCGACAATACGTCTTGAT
LOC_Os09g35980
Os.52276.1.S1_at--537--4671Chr09:20731341..20731365 (25 bp)
GCGGGATTTGTTGGATCCATCCTCA
LOC_Os09g35980
Os.52276.1.S1_at--670--1831Chr09:20731317..20731341 (25 bp)
ACGCTTCGGATTCCTTGCTCAAGAG
LOC_Os09g35980
Os.52276.1.S1_at--942--5531Chr09:20731293..20731317 (25 bp)
GAAACATCCATGCATATCGTCGACA
LOC_Os09g35980
Os.52276.1.S1_at--196--211Chr09:20731280..20731304 (25 bp)
ATATCGTCGACAGCGTTCGTTCAGT
LOC_Os09g35980
Os.52276.1.S1_at--380--10211Chr09:20731217..20731241 (25 bp)
TATTGTTATTGCTGCCTATTCGCTC
LOC_Os09g35980
Os.52276.1.S1_at--483--3691Chr09:20731202..20731226 (25 bp)
CTATTCGCTCGCCAGTGATGAAGAA
LOC_Os09g35980
Os.52276.1.S1_at--161--10071Chr09:20731177..20731201 (25 bp)
TAGTCCTGCCTATATTTGCCTGTAG
LOC_Os09g35980
Target Sequence 
ATACATTCTATCTGCTTAACGCTCCACATTATCCAAAAAAATGCATCACACTCCATATTGGGAACACGTTGGTGGTTCTG
AACCAAAGTCGATCTCTTGATGCCAATTTTTTTTTTGAGCTGGTTGAGTAGTCGAACTGGGAACAATTACTGCTTGAGGC
TACAAAATTTCTGGCCGACAATACGTCTTGATCAGGAACTGACTAAAGAAATTCCCTTTCACCTTTTGCGGGATTTGTTG
GATCCATCCTCACGCTTCGGATTCCTTGCTCAAGAGAAACATCCATGCATATCGTCGACAGCGTTCGTTCAGTCCTCTTC
CTTTTGTTGTTGGTGCTGTTGTTATTATTGTTATTGTTATTGCTGCCTATTCGCTCGCCAGTGATGAAGAATAGTCCTGC
CTATATTTGCCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis