Browse Element(s) Details


OsAffx.27489.1.S1_at

Description tigr:9634.m00666
TID=OsAffx.27489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0734011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07300Os.22995.1.S1_at5/116+3503058..3507741Protein GOS9, putative
LOC_Os06g07300Os.11426.2.S1_x_at1/116+3503058..3507741Protein GOS9, putative
LOC_Os06g07320NANA6+3508676..3513721retrotransposon protein, putative, unclassified
LOC_Os06g07330OsAffx.15296.1.S1_at11/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4918.1.S1_at2/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4749.1.S1_x_at1/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07340OsAffx.27489.1.S1_at11/116+3531649..3532765hypothetical protein
LOC_Os06g07350Os.14314.1.S1_at11/116+3535684..3539224RNA recognition motif family protein, expressed
LOC_Os06g07360OsAffx.27490.1.S1_at11/116+3539813..3540835hypothetical protein
LOC_Os06g07360OsAffx.4222.1.A1_at1/116+3539813..3540835hypothetical protein
LOC_Os06g07370OsAffx.24046.2.S1_x_at11/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07370OsAffx.24046.7.S1_x_at4/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07370OsAffx.24046.3.S1_x_at1/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07370OsAffx.24046.5.S1_x_at1/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07380OsAffx.15299.2.S1_s_at11/116+3546140..3547597F-box domain containing protein
LOC_Os06g07380OsAffx.15299.3.S1_x_at1/116+3546140..3547597F-box domain containing protein
LOC_Os06g07390OsAffx.15299.3.S1_at2/116+3550015..3554476retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390OsAffx.15299.3.S1_x_at2/116+3550015..3554476retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390OsAffx.15299.2.S1_s_at1/116+3550015..3554476retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07400Os.56336.1.S1_at10/116+3557159..3558902retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07400Os.14692.1.S1_at1/116+3557159..3558902retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27489.1.S1_at--951--1851Chr06:3532556..3532580 (25 bp)
ACGACCCCGAGATGTGCTTATGCCT
LOC_Os06g07340
OsAffx.27489.1.S1_at--994--4471Chr06:3532518..3532542 (25 bp)
GCCTGGAGGAGTTCCGCATTACTTC
LOC_Os06g07340
OsAffx.27489.1.S1_at--655--1071Chr06:3532448..3532472 (25 bp)
AGGGACGCTGCGATTCATCTTATGC
LOC_Os06g07340
OsAffx.27489.1.S1_at--1158--691Chr06:3532410..3532434 (25 bp)
ATGAGATGTGCACCGTCCACTTTGA
LOC_Os06g07340
OsAffx.27489.1.S1_at--11--8531Chr06:3532315..3532339 (25 bp)
TGGACAGTGGACACCGGCAACGTCT
LOC_Os06g07340
OsAffx.27489.1.S1_at--334--9051Chr06:3532284..3532308 (25 bp)
TGCAGTCTGACGGTGAGCTGTTCCA
LOC_Os06g07340
OsAffx.27489.1.S1_at--764--9431Chr06:3532251..3532275 (25 bp)
TCGGTTTCCTGGACTTCGCTGACAG
LOC_Os06g07340
OsAffx.27489.1.S1_at--549--5351Chr06:3532226..3532250 (25 bp)
GAAGATCAGCGCAGTCTCCGTGTAC
LOC_Os06g07340
OsAffx.27489.1.S1_at--939--7431Chr06:3532207..3532231 (25 bp)
GTGTACAGGATGACCTCTCCGACGA
LOC_Os06g07340
OsAffx.27489.1.S1_at--1055--10211Chr06:3531861..3531885 (25 bp)
TATTCTCAGGTTATGCCCAGTCAGC
LOC_Os06g07340
OsAffx.27489.1.S1_at--1021--3511Chr06:3531712..3531736 (25 bp)
CATGCCGGGACCAGGGTTTGCGAAA
LOC_Os06g07340
Target Sequence 
ACGACCCCGAGATGTGCTTATGCCTCGTCAACGGCGACGCCTGGAGGAGTTCCGCATTACTTCCACACCCCTCACCAAGA
ACACGATCCCGGCCATCGCCGCCGTGGGAGGGACGCTGCGATTCATCTTATGCGAATGGAACGCGGATGAGATGTGCACC
GTCCACTTTGACTTGACCTCTCCTCCCGACCGTCCTCTCCGATCCGGTCGCCAAGTTCGACGCCAGTACACCGGCAAGGC
GTGGACAGTGGACACCGGCAACGTCTGGCTGCTGCAGTCTGACGGTGAGCTGTTCCAGGTCCTTCTCGGTTTCCTGGACT
TCGCTGACAGGAAGATCAGCGCAGTCTCCGTGTACAGGATGACCTCTCCGACGAGCTGCCGGGCTTGGCGCGCGTGCCCG
ACATCGGAGTGCAAAAACCCTCTTCTCTATTCTCAGGTTATGCCCAGTCAGCGCAAGGTGCCACCGTTCTGCATGCCGGG
ACCAGGGTTTGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis