Browse Element(s) Details

OsAffx.15299.3.S1_at

Description

tigr:9634.m00675
TID=OsAffx.15299.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07430	11/11	F-box domain containing protein
LOC_Os06g07390	2/11	retrotransposon protein, putative, Ty3-gypsy subclass, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07380	OsAffx.15299.2.S1_s_at	11/11	6	+	3546140..3547597	F-box domain containing protein
LOC_Os06g07380	OsAffx.15299.3.S1_x_at	1/11	6	+	3546140..3547597	F-box domain containing protein
LOC_Os06g07390	OsAffx.15299.3.S1_at	2/11	6	+	3550015..3554476	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390	OsAffx.15299.3.S1_x_at	2/11	6	+	3550015..3554476	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390	OsAffx.15299.2.S1_s_at	1/11	6	+	3550015..3554476	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07400	Os.56336.1.S1_at	10/11	6	+	3557159..3558902	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07400	Os.14692.1.S1_at	1/11	6	+	3557159..3558902	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07410	OsAffx.15298.1.S1_at	11/11	6	+	3563648..3564653	hypothetical protein
LOC_Os06g07420	NA	NA	6	+	3565182..3569068	retrotransposon protein, putative, unclassified
LOC_Os06g07430	OsAffx.15299.3.S1_at	11/11	6	+	3570552..3571235	F-box domain containing protein
LOC_Os06g07430	OsAffx.15299.3.S1_x_at	11/11	6	+	3570552..3571235	F-box domain containing protein
LOC_Os06g07430	OsAffx.22217.1.S1_x_at	2/11	6	+	3570552..3571235	F-box domain containing protein
LOC_Os06g07440	Os.43764.1.A1_at	7/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.2.S1_x_at	3/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.7.S1_x_at	3/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.3.S1_x_at	1/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07450	OsAffx.15299.2.S1_s_at	11/11	6	+	3579485..3580357	F-box protein interaction domain containing protein
LOC_Os06g07460	OsAffx.27492.1.S1_at	11/11	6	+	3581154..3582434	F-box domain containing protein, expressed
LOC_Os06g07470	Os.53563.1.S1_at	10/11	6	+	3584218..3587271	expressed protein
LOC_Os06g07474	Os.54529.1.S1_at	10/11	6	+	3587218..3594866	TPR Domain containing protein, expressed
LOC_Os06g07480	Os.27959.1.A1_at	11/11	6	+	3595002..3597292	CDK-activating kinase assembly factor MAT1 family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15299.3.S1_at--590--395	1	Chr06:3570919..3570943 (25 bp)	CGGACTCCGCGCTTGGGATGACATG	LOC_Os06g07430
OsAffx.15299.3.S1_at--84--573	1	Chr06:3570921..3570945 (25 bp)	GACTCCGCGCTTGGGATGACATGGT	LOC_Os06g07430
OsAffx.15299.3.S1_at--1077--929	1	Chr06:3570924..3570948 (25 bp)	TCCGCGCTTGGGATGACATGGTCCT	LOC_Os06g07430
OsAffx.15299.3.S1_at--754--457	2	Chr06:3570927..3570951 (25 bp)	GCGCTTGGGATGACATGGTCCTCGA	LOC_Os06g07430
OsAffx.15299.3.S1_at--693--1083	2	Chr06:3570931..3570955 (25 bp)	TTGGGATGACATGGTCCTCGAAGTC	LOC_Os06g07430
OsAffx.15299.3.S1_at--912--797	1	Chr06:3570934..3570958 (25 bp)	GGATGACATGGTCCTCGAAGTCGAC	LOC_Os06g07430
OsAffx.15299.3.S1_at--375--893	1	Chr06:3570937..3570961 (25 bp)	TGACATGGTCCTCGAAGTCGACCGT	LOC_Os06g07430
OsAffx.15299.3.S1_at--1054--139	1	Chr06:3570974..3570998 (25 bp)	AGACGGGTACGCTGCGGCTGATGGG	LOC_Os06g07430
OsAffx.15299.3.S1_at--76--261	1	Chr06:3571017..3571041 (25 bp)	AACGCCGACGACAACTTGGACGCCG	LOC_Os06g07430
OsAffx.15299.3.S1_at--1027--325	1	Chr06:3571136..3571160 (25 bp)	CAACGGGCTCGTGTATAGTTGGCCA	LOC_Os06g07430
OsAffx.15299.3.S1_at--160--399	1	Chr06:3571139..3571163 (25 bp)	CGGGCTCGTGTATAGTTGGCCATAT	LOC_Os06g07430

Target Sequence

CGGACTCCGCGCTTGGGATGACATGGTCCTCGAAGTCGACCGTCGCCGCCGCCGCAGACGGGTACGCTGCGGCTGATGGG
GACGCCGTGGACGTCGGGAACGCCGACGACAACTTGGACGCCGCCGTCGACGACGGGAACGCCGCCGCGGACTGGGACGA
CGACGACGACTGGGACATCGACGTTGGCGCCATCGGCTGGGCCTTGCATCTGCACTGCAACGGGCTCGTGTATAGTTGGC
CATAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis