Browse Element(s) Details


OsAffx.27492.1.S1_at

Description tigr:9634.m00678
TID=OsAffx.27492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0746011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07400Os.56336.1.S1_at10/116+3557159..3558902retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07400Os.14692.1.S1_at1/116+3557159..3558902retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07410OsAffx.15298.1.S1_at11/116+3563648..3564653hypothetical protein
LOC_Os06g07420NANA6+3565182..3569068retrotransposon protein, putative, unclassified
LOC_Os06g07430OsAffx.15299.3.S1_at11/116+3570552..3571235F-box domain containing protein
LOC_Os06g07430OsAffx.15299.3.S1_x_at11/116+3570552..3571235F-box domain containing protein
LOC_Os06g07430OsAffx.22217.1.S1_x_at2/116+3570552..3571235F-box domain containing protein
LOC_Os06g07440Os.43764.1.A1_at7/116+3576351..3578642hAT family dimerisation domain containing protein
LOC_Os06g07440OsAffx.24046.2.S1_x_at3/116+3576351..3578642hAT family dimerisation domain containing protein
LOC_Os06g07440OsAffx.24046.7.S1_x_at3/116+3576351..3578642hAT family dimerisation domain containing protein
LOC_Os06g07440OsAffx.24046.3.S1_x_at1/116+3576351..3578642hAT family dimerisation domain containing protein
LOC_Os06g07450OsAffx.15299.2.S1_s_at11/116+3579485..3580357F-box protein interaction domain containing protein
LOC_Os06g07460OsAffx.27492.1.S1_at11/116+3581154..3582434F-box domain containing protein, expressed
LOC_Os06g07470Os.53563.1.S1_at10/116+3584218..3587271expressed protein
LOC_Os06g07474Os.54529.1.S1_at10/116+3587218..3594866TPR Domain containing protein, expressed
LOC_Os06g07480Os.27959.1.A1_at11/116+3595002..3597292CDK-activating kinase assembly factor MAT1 family protein, expressed
LOC_Os06g07490Os.49296.1.S1_at11/116+3597467..3604189expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27492.1.S1_at--693--2791Chr06:3581617..3581641 (25 bp)
CAACCCCAGGGATGCTACGCTTCGA
LOC_Os06g07460
OsAffx.27492.1.S1_at--973--1611Chr06:3581506..3581530 (25 bp)
AGCTGTCCGGCAACAAGCTGTGCTA
LOC_Os06g07460
OsAffx.27492.1.S1_at--912--8411Chr06:3581465..3581489 (25 bp)
GGCCATACCGTTGAGCTCTGGACGA
LOC_Os06g07460
OsAffx.27492.1.S1_at--490--1591Chr06:3581452..3581476 (25 bp)
AGCTCTGGACGATGGCGGCTGCTTC
LOC_Os06g07460
OsAffx.27492.1.S1_at--280--3951Chr06:3581399..3581423 (25 bp)
CGGCATTGCGCCGTCGAGCTATGGC
LOC_Os06g07460
OsAffx.27492.1.S1_at--1060--431Chr06:3581327..3581351 (25 bp)
ATCTTCTTCAACTTGGATCTCGCCG
LOC_Os06g07460
OsAffx.27492.1.S1_at--307--7971Chr06:3581313..3581337 (25 bp)
GGATCTCGCCGTGATTGACAGGCAT
LOC_Os06g07460
OsAffx.27492.1.S1_at--738--6591Chr06:3581301..3581325 (25 bp)
GATTGACAGGCATGACACCCAACGC
LOC_Os06g07460
OsAffx.27492.1.S1_at--1136--6651Chr06:3581270..3581294 (25 bp)
GTTGAACGTGTGGTCGACATGAACA
LOC_Os06g07460
OsAffx.27492.1.S1_at--557--6031Chr06:3581243..3581267 (25 bp)
GAGATGACCTACTTCCATTCAAGGG
LOC_Os06g07460
OsAffx.27492.1.S1_at--734--7731Chr06:3581188..3581212 (25 bp)
GGTGGATGCACCATGTCATTCAGTA
LOC_Os06g07460
Target Sequence 
CAACCCCAGGGATGCTACGCTTCGACGTGCGCCGCGAGGTGTTCGACGATTTCCCGAGCCCGCCGTGCGTGCATCACGAC
GGCACTTCGCCGGCGACCGCGACCCTGACGGAGCTGTCCGGCAACAAGCTGTGCTACGCGCACGTCGTCGCCGGCCATAC
CGTTGAGCTCTGGACGATGGCGGCTGCTTCCGCCGCCGACGACGGGCCGCGGTGGTCGCGGCATTGCGCCGTCGAGCTAT
GGCGCCCCACTCAGCTCGTCGTCCCGTTTGCCGACGATCGCCATGGCGGCATCTTCTTCAACTTGGATCTCGCCGTGATT
GACAGGCATGACACCCAACGCCAAGTTGTTGAACGTGTGGTCGACATGAACAAGGAGATGACCTACTTCCATTCAAGGGA
CAAGCAGTACTACATAAATCGTGGATTTAGGTGGATGCACCATGTCATTCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis