Browse Element(s) Details

Os.56336.1.S1_at

Description

gb:AK109875.1
DB_XREF= gi:32995084
TID=Os.56336.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-B12, full insert sequence.
FL= gb:AK109875.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07400	10/11	retrotransposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07340	OsAffx.27489.1.S1_at	11/11	6	+	3531649..3532765	hypothetical protein
LOC_Os06g07350	Os.14314.1.S1_at	11/11	6	+	3535684..3539224	RNA recognition motif family protein, expressed
LOC_Os06g07360	OsAffx.27490.1.S1_at	11/11	6	+	3539813..3540835	hypothetical protein
LOC_Os06g07360	OsAffx.4222.1.A1_at	1/11	6	+	3539813..3540835	hypothetical protein
LOC_Os06g07370	OsAffx.24046.2.S1_x_at	11/11	6	+	3542442..3544712	hAT family dimerisation domain containing protein
LOC_Os06g07370	OsAffx.24046.7.S1_x_at	4/11	6	+	3542442..3544712	hAT family dimerisation domain containing protein
LOC_Os06g07370	OsAffx.24046.3.S1_x_at	1/11	6	+	3542442..3544712	hAT family dimerisation domain containing protein
LOC_Os06g07370	OsAffx.24046.5.S1_x_at	1/11	6	+	3542442..3544712	hAT family dimerisation domain containing protein
LOC_Os06g07380	OsAffx.15299.2.S1_s_at	11/11	6	+	3546140..3547597	F-box domain containing protein
LOC_Os06g07380	OsAffx.15299.3.S1_x_at	1/11	6	+	3546140..3547597	F-box domain containing protein
LOC_Os06g07390	OsAffx.15299.3.S1_at	2/11	6	+	3550015..3554476	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390	OsAffx.15299.3.S1_x_at	2/11	6	+	3550015..3554476	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390	OsAffx.15299.2.S1_s_at	1/11	6	+	3550015..3554476	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07400	Os.56336.1.S1_at	10/11	6	+	3557159..3558902	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07400	Os.14692.1.S1_at	1/11	6	+	3557159..3558902	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07410	OsAffx.15298.1.S1_at	11/11	6	+	3563648..3564653	hypothetical protein
LOC_Os06g07420	NA	NA	6	+	3565182..3569068	retrotransposon protein, putative, unclassified
LOC_Os06g07430	OsAffx.15299.3.S1_at	11/11	6	+	3570552..3571235	F-box domain containing protein
LOC_Os06g07430	OsAffx.15299.3.S1_x_at	11/11	6	+	3570552..3571235	F-box domain containing protein
LOC_Os06g07430	OsAffx.22217.1.S1_x_at	2/11	6	+	3570552..3571235	F-box domain containing protein
LOC_Os06g07440	Os.43764.1.A1_at	7/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.2.S1_x_at	3/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.7.S1_x_at	3/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.3.S1_x_at	1/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07450	OsAffx.15299.2.S1_s_at	11/11	6	+	3579485..3580357	F-box protein interaction domain containing protein
LOC_Os06g07460	OsAffx.27492.1.S1_at	11/11	6	+	3581154..3582434	F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.56336.1.S1_at--455--123	1	Chr06:3558333..3558357 (25 bp)	AGTTCGCTGCGCTCTTGGTTTCTTG	LOC_Os06g07400
Os.56336.1.S1_at--276--45	1	Chr06:3558486..3558510 (25 bp)	ATCTAGGCCGCTATTGGCGTTCAGC	LOC_Os06g07400
Os.56336.1.S1_at--1103--755	1	Chr06:3558636..3558660 (25 bp)	GGGCCTTCATGCAACGACGGAGACC	LOC_Os06g07400
Os.56336.1.S1_at--382--575	1	Chr06:3558651..3558675 (25 bp)	GACGGAGACCCATTGGTTGGTTGTT	LOC_Os06g07400
Os.56336.1.S1_at--490--1001	1	Chr06:3558713..3558737 (25 bp)	TAGCAGCCCAAACGTGTTCAACCAA	LOC_Os06g07400
Os.56336.1.S1_at--340--675	1	Chr06:3558728..3558752 (25 bp)	GTTCAACCAACGCAGCAAGTTTCAG	LOC_Os06g07400
Os.56336.1.S1_at--1043--1053	1	Chr06:3558748..3558772 (25 bp)	TTCAGGATACTCGACAGGGCACGCA	LOC_Os06g07400
Os.56336.1.S1_at--331--649	3	Chr06:3558774..3558798 (25 bp)	GATTAACGGACGTACGGCTCCGACT	LOC_Os06g07400
Os.56336.1.S1_at--424--833	1	Chr06:3558789..3558813 (25 bp)	GGCTCCGACTCCGAGAGGCGAGATT	LOC_Os06g07400
Os.56336.1.S1_at--124--91	1	Chr06:3558804..3558828 (25 bp)	AGGCGAGATTCCGATTTGATTGCAG	LOC_Os06g07400
Os.56336.1.S1_at--617--65	2	Chr06:3558881..3558905 (25 bp)	ATGCAAGCATCCTCTTCCTATAAAA	NONE

Target Sequence

AGTTCGCTGCGCTCTTGGTTTCTTGCGCCGCGGCGGAGGCGGCGTTGGCCAATGGCCTCGGCAGCCAACCTGCGGGCGTC
GGTGCCGGAGGCCGTGGCAGCCAGTCGACGATGAAGAGGCGCCCGCCGCCAGCCGCCAGGCGTCCTCCAGAGCATCTAGG
CCGCTATTGGCGTTCAGCTTCGGCGGCGCACGGACGCAGAATCCTTCCTCCTGCTCGGAGGAAGGCCATGGCGACGGGCG
GTGGTGGTGGATGCTGGCGCTGGCGGTGGGCGCGAGCTCGACGCGCCTCCTCGGCGTCAAGCGGGGCCTTCATGCAACGA
CGGAGACCCATTGGTTGGTTGTTGGTGTTGCTGGCGCGGGACGTGTTCTGGCCCATCTCGTAGCAGCCCAAACGTGTTCA
ACCAACGCAGCAAGTTTCAGGATACTCGACAGGGCACGCAAGATTAACGGACGTACGGCTCCGACTCCGAGAGGCGAGAT
TCCGATTTGATTGCAGAACTGATGTCAGATTCCGAATCAAAAAACAAAAAGTAAAAACGATTCGGACAATGCAAGCATCC
TCTTCCTATAAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis