Browse Element(s) Details

OsAffx.27490.1.S1_at

Description

tigr:9634.m00668
TID=OsAffx.27490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07360	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07330	OsAffx.15296.1.S1_at	11/11	6	+	3514131..3519690	transposon protein, putative, Mutator sub-class
LOC_Os06g07330	OsAffx.4918.1.S1_at	2/11	6	+	3514131..3519690	transposon protein, putative, Mutator sub-class
LOC_Os06g07330	OsAffx.4749.1.S1_x_at	1/11	6	+	3514131..3519690	transposon protein, putative, Mutator sub-class
LOC_Os06g07340	OsAffx.27489.1.S1_at	11/11	6	+	3531649..3532765	hypothetical protein
LOC_Os06g07350	Os.14314.1.S1_at	11/11	6	+	3535684..3539224	RNA recognition motif family protein, expressed
LOC_Os06g07360	OsAffx.27490.1.S1_at	11/11	6	+	3539813..3540835	hypothetical protein
LOC_Os06g07360	OsAffx.4222.1.A1_at	1/11	6	+	3539813..3540835	hypothetical protein
LOC_Os06g07370	OsAffx.24046.2.S1_x_at	11/11	6	+	3542442..3544712	hAT family dimerisation domain containing protein
LOC_Os06g07370	OsAffx.24046.7.S1_x_at	4/11	6	+	3542442..3544712	hAT family dimerisation domain containing protein
LOC_Os06g07370	OsAffx.24046.3.S1_x_at	1/11	6	+	3542442..3544712	hAT family dimerisation domain containing protein
LOC_Os06g07370	OsAffx.24046.5.S1_x_at	1/11	6	+	3542442..3544712	hAT family dimerisation domain containing protein
LOC_Os06g07380	OsAffx.15299.2.S1_s_at	11/11	6	+	3546140..3547597	F-box domain containing protein
LOC_Os06g07380	OsAffx.15299.3.S1_x_at	1/11	6	+	3546140..3547597	F-box domain containing protein
LOC_Os06g07390	OsAffx.15299.3.S1_at	2/11	6	+	3550015..3554476	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390	OsAffx.15299.3.S1_x_at	2/11	6	+	3550015..3554476	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390	OsAffx.15299.2.S1_s_at	1/11	6	+	3550015..3554476	retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07400	Os.56336.1.S1_at	10/11	6	+	3557159..3558902	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07400	Os.14692.1.S1_at	1/11	6	+	3557159..3558902	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07410	OsAffx.15298.1.S1_at	11/11	6	+	3563648..3564653	hypothetical protein
LOC_Os06g07420	NA	NA	6	+	3565182..3569068	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27490.1.S1_at--576--245	1	Chr06:3539854..3539878 (25 bp)	AAAATTGTACAAATGCAGTGCGTTA	LOC_Os06g07360
OsAffx.27490.1.S1_at--240--301	1	Chr06:3539865..3539889 (25 bp)	AATGCAGTGCGTTAGAGCACCGCCT	LOC_Os06g07360
OsAffx.27490.1.S1_at--149--111	1	Chr06:3539870..3539894 (25 bp)	AGTGCGTTAGAGCACCGCCTTTACA	LOC_Os06g07360
OsAffx.27490.1.S1_at--126--437	1	Chr06:3540497..3540521 (25 bp)	CCACGCGAACGAATCAACGAACCAT	LOC_Os06g07360
OsAffx.27490.1.S1_at--907--969	1	Chr06:3540510..3540534 (25 bp)	TCAACGAACCATCACCCGGGTGCAG	LOC_Os06g07360
OsAffx.27490.1.S1_at--697--157	1	Chr06:3540615..3540639 (25 bp)	AGCTCTCGACGAAGGGCGTGGTCGC	LOC_Os06g07360
OsAffx.27490.1.S1_at--858--415	1	Chr06:3540637..3540661 (25 bp)	CGCCGAGGTAGTGGTAGCGCAGCTC	LOC_Os06g07360
OsAffx.27490.1.S1_at--108--459	1	Chr06:3540653..3540677 (25 bp)	GCGCAGCTCGGCGATCGAAGAACCG	LOC_Os06g07360
OsAffx.27490.1.S1_at--292--159	1	Chr06:3540657..3540681 (25 bp)	AGCTCGGCGATCGAAGAACCGGCGC	LOC_Os06g07360
OsAffx.27490.1.S1_at--802--469	1	Chr06:3540683..3540707 (25 bp)	GCGGCCCAGGAAGTTGACATGGAAC	LOC_Os06g07360
OsAffx.27490.1.S1_at--842--281	1	Chr06:3540693..3540717 (25 bp)	AAGTTGACATGGAACCAGGCCTCGC	LOC_Os06g07360

Target Sequence

AAAATTGTACAAATGCAGTGCGTTAGAGCACCGCCTTTACAACAAAAAGCAAATTACAAAGTCTGTAATCTCTCTAAAGC
TGGCACTGCAGCAACATTCAACGAGCTCCTCCTCCCCGTTTTCCCGCCCACGCGAACGAATCAACGAACCATCACCCGGG
TGCAGCATCTCACCACCGCACCTCTCGCTGCACAACGCGCAGTACCCGCCGCCGCCGCCGCCGTCGCCGTCCGCGAGCGC
GGTGCAGCTCTCGACGAAGGGCGTGGTCGCCGAGGTAGTGGTAGCGCAGCTCGGCGATCGAAGAACCGGCGCGGCGGCCC
AGGAAGTTGACATGGAACCAGGCCTCGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis