Browse Element(s) Details


Os.14314.1.S1_at

Description gb:AK120360.1
DB_XREF= gi:37989983
TID=Os.14314.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067M02, full insert sequence.
FL= gb:AK111997.1 gb:AK120360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0735011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07320NANA6+3508676..3513721retrotransposon protein, putative, unclassified
LOC_Os06g07330OsAffx.15296.1.S1_at11/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4918.1.S1_at2/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4749.1.S1_x_at1/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07340OsAffx.27489.1.S1_at11/116+3531649..3532765hypothetical protein
LOC_Os06g07350Os.14314.1.S1_at11/116+3535684..3539224RNA recognition motif family protein, expressed
LOC_Os06g07360OsAffx.27490.1.S1_at11/116+3539813..3540835hypothetical protein
LOC_Os06g07360OsAffx.4222.1.A1_at1/116+3539813..3540835hypothetical protein
LOC_Os06g07370OsAffx.24046.2.S1_x_at11/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07370OsAffx.24046.7.S1_x_at4/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07370OsAffx.24046.3.S1_x_at1/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07370OsAffx.24046.5.S1_x_at1/116+3542442..3544712hAT family dimerisation domain containing protein
LOC_Os06g07380OsAffx.15299.2.S1_s_at11/116+3546140..3547597F-box domain containing protein
LOC_Os06g07380OsAffx.15299.3.S1_x_at1/116+3546140..3547597F-box domain containing protein
LOC_Os06g07390OsAffx.15299.3.S1_at2/116+3550015..3554476retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390OsAffx.15299.3.S1_x_at2/116+3550015..3554476retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07390OsAffx.15299.2.S1_s_at1/116+3550015..3554476retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g07400Os.56336.1.S1_at10/116+3557159..3558902retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07400Os.14692.1.S1_at1/116+3557159..3558902retrotransposon protein, putative, unclassified, expressed
LOC_Os06g07410OsAffx.15298.1.S1_at11/116+3563648..3564653hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14314.1.S1_at--565--1251Chr06:3536208..3536232 (25 bp)
AGACGACCCAGAACTGAAGGCCTTA
LOC_Os06g07350
Os.14314.1.S1_at--883--5271Chr06:3536193..3536217 (25 bp)
GAAGGCCTTAATCTTACTAGACGAG
LOC_Os06g07350
Os.14314.1.S1_at--268--9831Chr06:3536134..3536158 (25 bp)
TAAACTTTTAATGGACGCTGCGAAC
LOC_Os06g07350
Os.14314.1.S1_at--146--6931Chr06:3536052..3536076 (25 bp)
GTATGGATGTTCTCCCTGTATCTGA
LOC_Os06g07350
Os.14314.1.S1_at--877--9311Chr06:3536040..3536064 (25 bp)
TCCCTGTATCTGATGTGCCATTGAG
LOC_Os06g07350
Os.14314.1.S1_at--513--1531Chr06:3536010..3536034 (25 bp)
AGCAGGCTTTTGATGCGGCGATATG
LOC_Os06g07350
Os.14314.1.S1_at--841--9131Chr06:3535985..3536009 (25 bp)
TGCGGCCGCAAAGCAAGCTGCAGAG
LOC_Os06g07350
Os.14314.1.S1_at--562--1591Chr06:3535970..3535994 (25 bp)
AGCTGCAGAGCCGAACGCTTGGAGC
LOC_Os06g07350
Os.14314.1.S1_at--709--5871Chr06:3535949..3535973 (25 bp)
GAGCCTGTGGTCATTGTTGCTTGAT
LOC_Os06g07350
Os.14314.1.S1_at--489--5711Chr06:3535820..3535844 (25 bp)
GACTGTAACCCTCGTTTATTACCAG
LOC_Os06g07350
Os.14314.1.S1_at--804--771Chr06:3535776..3535800 (25 bp)
ATGTGTGACTCGCAGTACTTAGTAC
LOC_Os06g07350
Target Sequence 
AGACGACCCAGAACTGAAGGCCTTAATCTTACTAGACGAGTGATAAACAGTTAGCTGGAAACAAATGATGGTTTTAAACT
TTTAATGGACGCTGCGAACAAAACGTGAAGATGAATGAAGTTGCTTTCAGCTTCAGGCTTTCAGCAACTTGGGCTGGTAT
GGATGTTCTCCCTGTATCTGATGTGCCATTGAGGCAGCAGCAGGCTTTTGATGCGGCGATATGTGCGGCCGCAAAGCAAG
CTGCAGAGCCGAACGCTTGGAGCCTGTGGTCATTGTTGCTTGATAAGGTGTATCAACACTGTTGTTATTATACAATTTCA
AATCTGTGCATTTTCTATATTGCTATAGATATTGCTACTGTTGTATTCCTAGAATCTGTTCTTTGGAGGACTGTAACCCT
CGTTTATTACCAGCTTTCTTTTGTATGTTGTAATGTGTGACTCGCAGTACTTAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis