Browse Element(s) Details

Os.49296.1.S1_at

Description

gb:AK120233.1
DB_XREF= gi:37989856
TID=Os.49296.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043I15, full insert sequence.
FL= gb:AK120233.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07490	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07440	Os.43764.1.A1_at	7/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.2.S1_x_at	3/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.7.S1_x_at	3/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07440	OsAffx.24046.3.S1_x_at	1/11	6	+	3576351..3578642	hAT family dimerisation domain containing protein
LOC_Os06g07450	OsAffx.15299.2.S1_s_at	11/11	6	+	3579485..3580357	F-box protein interaction domain containing protein
LOC_Os06g07460	OsAffx.27492.1.S1_at	11/11	6	+	3581154..3582434	F-box domain containing protein, expressed
LOC_Os06g07470	Os.53563.1.S1_at	10/11	6	+	3584218..3587271	expressed protein
LOC_Os06g07474	Os.54529.1.S1_at	10/11	6	+	3587218..3594866	TPR Domain containing protein, expressed
LOC_Os06g07480	Os.27959.1.A1_at	11/11	6	+	3595002..3597292	CDK-activating kinase assembly factor MAT1 family protein, expressed
LOC_Os06g07490	Os.49296.1.S1_at	11/11	6	+	3597467..3604189	expressed protein
LOC_Os06g07500	NA	NA	6	+	3607449..3610769	retrotransposon protein, putative, unclassified
LOC_Os06g07510	NA	NA	6	+	3611417..3611752	retrotransposon protein, putative, unclassified
LOC_Os06g07520	OsAffx.22947.1.S1_x_at	11/11	6	+	3614983..3619557	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520	OsAffx.22947.3.S1_x_at	4/11	6	+	3614983..3619557	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520	OsAffx.22947.2.S1_x_at	4/11	6	+	3614983..3619557	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520	OsAffx.22947.5.S1_x_at	3/11	6	+	3614983..3619557	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07530	NA	NA	6	+	3623428..3629198	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49296.1.S1_at--188--585	1	Chr06:3598006..3598030 (25 bp)	GACCTTATAGAGTCCCAGCTGAAAA	LOC_Os06g07490
Os.49296.1.S1_at--674--605	1	Chr06:3597958..3597982 (25 bp)	GAGATTCTTATCAGCTCCTGGGAGC	LOC_Os06g07490
Os.49296.1.S1_at--1109--255	1	Chr06:3597904..3597928 (25 bp)	AACTGGGACCGGCATTCCTTGACAG	LOC_Os06g07490
Os.49296.1.S1_at--1116--359	1	Chr06:3597887..3597911 (25 bp)	CTTGACAGATCTACGAGCTGCCGTC	LOC_Os06g07490
Os.49296.1.S1_at--976--827	1	Chr06:3597825..3597849 (25 bp)	GGCATCTAGCCCTCGATTACAGAAG	LOC_Os06g07490
Os.49296.1.S1_at--268--473	1	Chr06:3597801..3597825 (25 bp)	GCTGGTCCAGTGGAATGCCTGATCT	LOC_Os06g07490
Os.49296.1.S1_at--424--477	1	Chr06:3597776..3597800 (25 bp)	GCTGCTATGGCGTTTCCTTGATGAA	LOC_Os06g07490
Os.49296.1.S1_at--847--287	1	Chr06:3597717..3597741 (25 bp)	AAGGGCCAAGGGACCAGCTGTCTGA	LOC_Os06g07490
Os.49296.1.S1_at--555--595	1	Chr06:3597694..3597718 (25 bp)	GAGCAACAGCGTGCCTGGATACTTG	LOC_Os06g07490
Os.49296.1.S1_at--408--795	1	Chr06:3597678..3597702 (25 bp)	GGATACTTGTTCTCATGGACTTTGG	LOC_Os06g07490
Os.49296.1.S1_at--967--683	1	Chr06:3597640..3597664 (25 bp)	GTTTGCAAGGTAAGCCCAGTTTCTA	LOC_Os06g07490

Target Sequence

GACCTTATAGAGTCCCAGCTGAAAAAGATTCAAGATGGCATTGCTGAAGAGATTCTTATCAGCTCCTGGGAGCTACACCA
GGGGACATCCTGCAGGGGTGTTAACTGGGACCGGCATTCCTTGACAGATCTACGAGCTGCCGTCGTATGCACCGGTGGCC
ATCGCTTGGCATCTCTGCTCCGGCATCTAGCCCTCGATTACAGAAGCTGGTCCAGTGGAATGCCTGATCTGCTGCTATGG
CGTTTCCTTGATGAAAGAGGAGGCGGTGAAGCTAAACTTGTGGAGGTCAAAGGGCCAAGGGACCAGCTGTCTGAGCAACA
GCGTGCCTGGATACTTGTTCTCATGGACTTTGGTTTTGATGTGGAAGTTTGCAAGGTAAGCCCAGTTTCTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis