Browse Element(s) Details


Os.37836.1.S1_at

Description gb:AK068367.1
DB_XREF= gi:32978385
TID=Os.37836.1
CNT=45
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.37836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147C17, full insert sequence.
FL= gb:AK104731.1 gb:AK119191.1 gb:AK068367.1 gb:AK106174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5499011/11TMS membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54960OsAffx.3076.1.S1_s_at11/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54960OsAffx.3076.1.S1_at9/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54970OsAffx.12648.1.S1_at11/112+33667028..33669164hypothetical protein
LOC_Os02g54980Os.26549.1.S1_at11/112+33682481..33684617Rieske domain containing protein, expressed
LOC_Os02g54990Os.37836.1.S1_at11/112+33684922..33688265TMS membrane family protein, putative, expressed
LOC_Os02g55000Os.15421.1.S1_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.1.S1_x_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.2.S1_at9/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55010Os.50477.1.S1_at11/112+33694546..33700463expressed protein
LOC_Os02g55010Os.4222.1.S1_at1/112+33694546..33700463expressed protein
LOC_Os02g55020Os.53988.1.S1_at10/112+33700647..33702979expressed protein
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37836.1.S1_at--688--2951Chr02:33685430..33685454 (25 bp)
AAGGCCAGTGACATACTCCTACTCG
LOC_Os02g54990
Os.37836.1.S1_at--655--3611Chr02:33685385..33685409 (25 bp)
CTTGGCAAGCATGTACTCCGCGATG
LOC_Os02g54990
Os.37836.1.S1_at--176--2691Chr02:33685321..33685345 (25 bp)
AAGCTTGTTGACGTTGGGTGGCCAT
LOC_Os02g54990
Os.37836.1.S1_at--792--7811Chr02:33685289..33685313 (25 bp)
GGTCAGGATTGCAACCCAGTGGGCA
LOC_Os02g54990
Os.37836.1.S1_at--469--1931Chr02:33685264..33685288 (25 bp)
ACGGCAGGTCTGTACATTTGGTCCC
LOC_Os02g54990
Os.37836.1.S1_at--990--3531Chr02:33685167..33685191 (25 bp)
CATCCTTTTGGAGCATCATCTATCT
LOC_Os02g54990
Os.37836.1.S1_at--380--5131Chr02:33685128..33685152 (25 bp)
GCAAATAGCTAAGCCGTCTCTCTAT
LOC_Os02g54990
Os.37836.1.S1_at--949--4011Chr02:33685114..33685138 (25 bp)
CGTCTCTCTATGTGTGGTCTGTAAT
LOC_Os02g54990
Os.37836.1.S1_at--271--10191Chr02:33685090..33685114 (25 bp)
TATTAACCGTGCGTAAACCAGTGGC
LOC_Os02g54990
Os.37836.1.S1_at--986--1091Chr02:33685071..33685095 (25 bp)
AGTGGCAAGAAGTCCCTGTCCGTGT
LOC_Os02g54990
Os.37836.1.S1_at--850--7251Chr02:33685054..33685078 (25 bp)
GTCCGTGTCATGGTTATCGAGTCTG
LOC_Os02g54990
Target Sequence 
AAGGCCAGTGACATACTCCTACTCGTTCTTCCACCTCATCTTCTCCTTGGCAAGCATGTACTCCGCGATGCTCTTGACTG
GNTGGTCAACCTCAGTTGGTGAGAGTGGAAAGCTTGTTGACGTTGGGTGGCCATCCGTTTGGGTCAGGATTGCAACCCAG
TGGGCAACGGCAGGTCTGTACATTTGGTCCCTTGTCGCCCCACTCCTCTTCCCCGATAGGGAATTCTAGATGAACCAGCG
TAAGTACTCAACTGCTGAGATNGCATCCTTTTGGAGCATCATCTATCTTGTCAAGCTTATTTGCAAATAGCTAAGCCGTC
TCTCTATGTGTGGTCTGTAATATTAACCGTGCGTAAACCAGTGGCAAGAAGTCCCTGTCCGTGTCATGGTTATCGAGTCT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis