Browse Element(s) Details


Os.50477.1.S1_at

Description gb:AK121357.1
DB_XREF= gi:37990980
TID=Os.50477.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123B03, full insert sequence.
FL= gb:AK121357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5501011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54980Os.26549.1.S1_at11/112+33682481..33684617Rieske domain containing protein, expressed
LOC_Os02g54990Os.37836.1.S1_at11/112+33684922..33688265TMS membrane family protein, putative, expressed
LOC_Os02g55000Os.15421.1.S1_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.1.S1_x_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.2.S1_at9/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55010Os.50477.1.S1_at11/112+33694546..33700463expressed protein
LOC_Os02g55010Os.4222.1.S1_at1/112+33694546..33700463expressed protein
LOC_Os02g55020Os.53988.1.S1_at10/112+33700647..33702979expressed protein
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50477.1.S1_at--259--3471Chr02:33699911..33699935 (25 bp)
CAGGGCTGGCTGGATGACATCACCG
LOC_Os02g55010
Os.50477.1.S1_at--1155--7231Chr02:33700043..33700067 (25 bp)
GTGCCACCGGCGAAAACCAAGGAAG
LOC_Os02g55010
Os.50477.1.S1_at--487--4251Chr02:33700185..33700209 (25 bp)
CCGTGCTGCAGGAGTGGCACCAGCT
LOC_Os02g55010
Os.50477.1.S1_at--224--7412Chr02:33700259..33700283 (25 bp)
GTGATTTTGAGTGCCATTTTTGTTC
LOC_Os02g55010
Os.50477.1.S1_at--592--10251Chr02:33700297..33700321 (25 bp)
TTTGTGTATGTATTAGCCCTGCTGA
LOC_Os02g55010
Os.50477.1.S1_at--768--9991Chr02:33700310..33700334 (25 bp)
TAGCCCTGCTGATTAATTTCACTCC
LOC_Os02g55010
Os.50477.1.S1_at--415--9751Chr02:33700323..33700347 (25 bp)
TAATTTCACTCCATGTACTACTGCC
LOC_Os02g55010
Os.50477.1.S1_at--748--7011Chr02:33700337..33700361 (25 bp)
GTACTACTGCCGATTTGTTCATTGT
LOC_Os02g55010
Os.50477.1.S1_at--160--2091Chr02:33700389..33700413 (25 bp)
ACATAGATCCAAGCTTTGGTGTGAA
LOC_Os02g55010
Os.50477.1.S1_at--19--8751Chr02:33700422..33700446 (25 bp)
TTTTTCCCCGGTGACCACACTATAT
LOC_Os02g55010
Os.50477.1.S1_at--697--4371Chr02:33700436..33700460 (25 bp)
CCACACTATATTCCTGGTCCATTTT
LOC_Os02g55010
Target Sequence 
CAGGGCTGGCTGGATGACATCACCGACGGCGCCGTGGAATACATGCCGGAGGAAGAGGTGAAGAGCGCGGCGGCTGAGCG
GCTGAAGGTTTCCATGGAGAGAATAGCCCTGCTCAAGGCGGCCAAGCCGAAGGTGCCACCGGCGAAAACCAAGGAAGAAG
AGGAAGAGGAGAAGNAGGAGCAAGAGGACCTGGACGAGTTTGGGAACCCCAAGGGCCCNTCGACGCTTTCCAAGCTGACG
GCGGAGGAGGCCGAGCACCGTGCGCTCCAGGCCGCCGTGCTGCAGGAGTGGCACCAGCTGTGCAAGGAGAAAGCCTTGAA
AGCACAGTGAGGCTTTTGGTTTTNTGTTGTGATTTTGAGTGCCATTTTTGTTCTTTTAACCCCCATTTTGTGTATGTATT
AGCCCTGCTGATTAATTTCACTCCATGTACTACTGCCGATTTGTTCATTGTATTCATTGTTCACAGATAACATTTGTAAC
ATAGATCCAAGCTTTGGTGTGAAAATACATTTTTTTCCCCGGTGACCACACTATATTCCTGGTCCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis