Browse Element(s) Details


Os.15421.1.S1_x_at

Description gb:AK105863.1
DB_XREF= gi:32991072
TID=Os.15421.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A04, full insert sequence.
FL= gb:AK105863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5500011/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54970OsAffx.12648.1.S1_at11/112+33667028..33669164hypothetical protein
LOC_Os02g54980Os.26549.1.S1_at11/112+33682481..33684617Rieske domain containing protein, expressed
LOC_Os02g54990Os.37836.1.S1_at11/112+33684922..33688265TMS membrane family protein, putative, expressed
LOC_Os02g55000Os.15421.1.S1_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.1.S1_x_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.2.S1_at9/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55010Os.50477.1.S1_at11/112+33694546..33700463expressed protein
LOC_Os02g55010Os.4222.1.S1_at1/112+33694546..33700463expressed protein
LOC_Os02g55020Os.53988.1.S1_at10/112+33700647..33702979expressed protein
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15421.1.S1_x_at--578--1291Chr02:33689481..33689505 (25 bp)
AGATGTTGCAGAAGGCTCAGCCGTG
LOC_Os02g55000
Os.15421.1.S1_x_at--719--5351Chr02:33689401..33689425 (25 bp)
GAAGATCCTTGCTTGCATACGATGA
LOC_Os02g55000
Os.15421.1.S1_x_at--346--2931Chr02:33689309..33689333 (25 bp)
AAGGCATTCTACGAAGCAGCTTCAA
LOC_Os02g55000
Os.15421.1.S1_x_at--666--4971Chr02:33689147..33689171 (25 bp)
GCATCTGCCAGTCAATCAATATCCA
LOC_Os02g55000
Os.15421.1.S1_x_at--593--311Chr02:33689117..33689141 (25 bp)
ATACCTGAAGGTTGTCGTGGCATGC
LOC_Os02g55000
Os.15421.1.S1_x_at--551--3991Chr02:33689102..33689126 (25 bp)
CGTGGCATGCGACTTCAGATTGCTT
LOC_Os02g55000
Os.15421.1.S1_x_at--601--6591Chr02:33689085..33689109 (25 bp)
GATTGCTTGTTCTTTCATGCCTTAT
LOC_Os02g55000
Os.15421.1.S1_x_at--448--7411Chr02:33689002..33689026 (25 bp)
GTGATATCTAGTTTGTCCGCCAGAA
LOC_Os02g55000
Os.15421.1.S1_x_at--235--971Chr02:33688973..33688997 (25 bp)
AGGACCATATTGTTTCGAGTTCTGA
LOC_Os02g55000
Os.15421.1.S1_x_at--980--8971Chr02:33688951..33688975 (25 bp)
TGAACTCACAAACTTATGCTCCCTA
LOC_Os02g55000
Os.15421.1.S1_x_at--1136--9091Chr02:33688935..33688959 (25 bp)
TGCTCCCTATTGTCATTTTGGTACC
LOC_Os02g55000
Target Sequence 
AGATGTTGCAGAAGGCTCAGCCGTGAAATCTAAAAAGGATTCATCCGGTGAGGCAAATGGACATGCCAAGAAGGAAGACA
GAAGATCCTTGCTTGCATACGATGACGAAGTGAAAGAACTGAGGAGCCGTGTTGAGAAGCTGGAGGAAATGATGAAGCGA
AACCGCAAGGACAAGGCATTCTACGAAGCAGCTTCAAAGAAATTGAAACAAACCCGAAAAGCTCTAGCTGATGCTGAAGC
AACGCATGCTTCGGCAACCAACGCGGTTGCTAGAAAGGAGAAAGAGAAGAAATGGTTAAAATTCTAATGTCAATTTTCGA
TGCAGTATCAATTAGCATCTGCCAGTCAATCAATATCCATTTTGATACCTGAAGGTTGTCGTGGCATGCGACTTCAGATT
GCTTGTTCTTTCATGCCTTATACAGTGTGATCTGTGGCTGTAATGTTTTAGGAGCTCTGTTGTAGGGAAAATATAGGATG
TGATATCTAGTTTGTCCGCCAGAAGTTCAGGACCATATTGTTTCGAGTTCTGAACTCACAAACTTATGCTCCCTATTGTC
ATTTTGGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15421.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis