Browse Element(s) Details


Os.56312.1.S1_at

Description gb:AK109835.1
DB_XREF= gi:32995044
TID=Os.56312.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-D06, full insert sequence.
FL= gb:AK109835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5504011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55000Os.15421.1.S1_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.1.S1_x_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.2.S1_at9/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55010Os.50477.1.S1_at11/112+33694546..33700463expressed protein
LOC_Os02g55010Os.4222.1.S1_at1/112+33694546..33700463expressed protein
LOC_Os02g55020Os.53988.1.S1_at10/112+33700647..33702979expressed protein
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56312.1.S1_at--298--10671Chr02:33715615..33715639 (25 bp)
TTCCTAGTCCTATGATTTATTTGCA
LOC_Os02g55040
Os.56312.1.S1_at--447--9051Chr02:33715636..33715660 (25 bp)
TGCATGTATAAGGAGCAATCGATAG
LOC_Os02g55040
Os.56312.1.S1_at--728--2791Chr02:33715690..33715714 (25 bp)
AAGAGGATGCTCCATTATCGACAGG
LOC_Os02g55040
Os.56312.1.S1_at--489--9351Chr02:33715707..33715731 (25 bp)
TCGACAGGATGTAGACTTCAAGTTA
LOC_Os02g55040
Os.56312.1.S1_at--707--4951Chr02:33715744..33715768 (25 bp)
GCATTTAAGAATTCACCGATGTTCA
LOC_Os02g55040
Os.56312.1.S1_at--644--351Chr02:33715788..33715812 (25 bp)
ATAATTGCTTTATAGTGGCCTACTG
LOC_Os02g55040
Os.56312.1.S1_at--688--7551Chr02:33715802..33715826 (25 bp)
GTGGCCTACTGTTACAACTACAGAT
LOC_Os02g55040
Os.56312.1.S1_at--308--2011Chr02:33715818..33715842 (25 bp)
ACTACAGATCTACCTAGTACCTACC
LOC_Os02g55040
Os.56312.1.S1_at--820--9531Chr02:33715826..33715850 (25 bp)
TCTACCTAGTACCTACCCATAGAAG
LOC_Os02g55040
Os.56312.1.S1_at--146--7051Chr02:33715866..33715890 (25 bp)
GTAAATGTCTTCTTAGCTGGTCACT
LOC_Os02g55040
Os.56312.1.S1_at--466--3651Chr02:33715874..33715898 (25 bp)
CTTCTTAGCTGGTCACTGTGGTATA
LOC_Os02g55040
Target Sequence 
TTCCTAGTCCTATGATTTATTTGCATGTATAAGGAGCAATCGATAGGATAATTGGTTCATCGAAAATATGCTGAAAAGAG
GATGCTCCATTATCGACAGGATGTAGACTTCAAGTTAATTTTAGTCTATGCATTTAAGAATTCACCGATGTTCAAAAAAG
GTGGATCAAATTTATAATTGCTTTATAGTGGCCTACTGTTACAACTACAGATCTACCTAGTACCTACCCATAGAAGTAAA
TTACCCTAGAAGTAAATGTCTTCTTAGCTGGTCACTGTGGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis