Browse Element(s) Details


OsAffx.12649.1.S1_at

Description tigr:9630.m05469
TID=OsAffx.12649.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5510010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein
LOC_Os02g55110Os.21370.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55110OsAffx.24876.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55120Os.27119.1.S1_at10/112+33753148..33756764Translation initiation factor IF-3, C-terminal domain containing protein, expressed
LOC_Os02g55130Os.10548.2.S1_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55130Os.10548.1.S1_s_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12649.1.S1_at--616--591NONE
ATGCCTTCTCCGACAACCACTAGTT
NONE
OsAffx.12649.1.S1_at--403--2211Chr02:33739210..33739558 (25 bp)
ACAACCACTAGTTCTTCCAGGCTAT
LOC_Os02g55100
OsAffx.12649.1.S1_at--958--10671Chr02:33739548..33739572 (25 bp)
TTCCAGGCTATCTGTGGGCTTCATC
LOC_Os02g55100
OsAffx.12649.1.S1_at--50--7491Chr02:33739561..33739585 (25 bp)
GTGGGCTTCATCAGGACTACTGTAA
LOC_Os02g55100
OsAffx.12649.1.S1_at--446--6751Chr02:33739582..33739606 (25 bp)
GTAAAATGGTCCAGCGAAATTTCGC
LOC_Os02g55100
OsAffx.12649.1.S1_at--1109--4591Chr02:33739595..33739619 (25 bp)
GCGAAATTTCGCTTTATGTCAGGTT
LOC_Os02g55100
OsAffx.12649.1.S1_at--329--10631Chr02:33739659..33739763 (25 bp)
TTCGCTTTATGTCAGGTTGTCAATG
LOC_Os02g55100
OsAffx.12649.1.S1_at--448--351Chr02:33739767..33739791 (25 bp)
ATAACTGGAGTATCACTGAAGGATG
LOC_Os02g55100
OsAffx.12649.1.S1_at--970--6611Chr02:33739804..33739828 (25 bp)
GTTGGAGTGTCATGTACAGGCCCTT
LOC_Os02g55100
OsAffx.12649.1.S1_at--1087--7011Chr02:33739817..33739840 (24 bp)
GTACAGGCCCTTGCAGACATTTCGA
LOC_Os02g55100
OsAffx.12649.1.S1_at--987--5671Chr02:33739832..33740000 (25 bp)
GACATTTCGAAAAAGCTGCAGTGCT
LOC_Os02g55100
Target Sequence 
ATGCCTTCTCCGACAACCACTAGTTCTTCCAGGCTATCTGTGGGCTTCATCAGGACTACTGTAAAATGGTCCAGCGAAAT
TTCGCTTTATGTCAGGTTGTCAATGATGATAACTGGAGTATCACTGAAGGATGATGGTAAAGATCGTTGGAGTGTCATGT
ACAGGCCCTTGCAGACATTTCGAAAAAGCTGCAGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis