Browse Element(s) Details


Os.55228.1.S1_at

Description gb:AK107695.1
DB_XREF= gi:32992904
TID=Os.55228.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C05, full insert sequence.
FL= gb:AK107695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5509011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein
LOC_Os02g55110Os.21370.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55110OsAffx.24876.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55120Os.27119.1.S1_at10/112+33753148..33756764Translation initiation factor IF-3, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55228.1.S1_at--414--10091Chr02:33736051..33736075 (25 bp)
TAGGATGTTTGGTTCGCGTGGATTC
LOC_Os02g55090
Os.55228.1.S1_at--909--7571Chr02:33736015..33736039 (25 bp)
GGGCTGGTGGTAATTCCGATGCATT
LOC_Os02g55090
Os.55228.1.S1_at--517--7671Chr02:33735937..33735961 (25 bp)
GGGATTTCGCGTAGATGTGCCCCAC
LOC_Os02g55090
Os.55228.1.S1_at--987--4511Chr02:33735919..33735943 (25 bp)
GCCCCACGGTTTAGTTGCGACTTGA
LOC_Os02g55090
Os.55228.1.S1_at--720--6991Chr02:33735894..33735918 (25 bp)
GTACGGATTGCTCGAATCATCCATG
LOC_Os02g55090
Os.55228.1.S1_at--499--8851Chr02:33735871..33735895 (25 bp)
TGATCGGATCCTGATGTCGCGTTAA
LOC_Os02g55090
Os.55228.1.S1_at--1012--10371Chr02:33735772..33735796 (25 bp)
TTTTGGCTTTGGGAATTCGGCACGC
LOC_Os02g55090
Os.55228.1.S1_at--102--2151Chr02:33735741..33735765 (25 bp)
ACAGCGGCCGCTATGTAGGGATAAT
LOC_Os02g55090
Os.55228.1.S1_at--445--4451Chr02:33735613..33735637 (25 bp)
GCCTTTCTTTTGATGGTCTGTTTCA
LOC_Os02g55090
Os.55228.1.S1_at--668--2251Chr02:33735578..33735602 (25 bp)
AAATATCATGCTGCTGGGTTTCCTT
LOC_Os02g55090
Os.55228.1.S1_at--510--3071Chr02:33735496..33735520 (25 bp)
CAATCAAACTGCTCTTTTTCCCTTG
LOC_Os02g55090
Target Sequence 
TAGGATGTTTGGTTCGCGTGGATTCGTTGCGGCCGCGGGCTGGTGGTAATTCCGATGCATTGTTGGGTTGTGTTGATGGC
TTTGGTTCGGGAGATTCCGGTTCTTGGTTCGGGGGGGATTTCGCGTAGATGTGCCCCACGGTTTAGTTGCGACTTGAGTA
CGGATTGCTCGAATCATCCATGATCGGATCCTGATGTCGCGTTAATCGAGTGGTTTTAGTACTGGGAGTAGAGAAATGTC
ATCAGGAAAGACGCAGCCGGGCCAGAATTTTTTTTTCTTTTTTTTTGGCTTTGGGAATTCGGCACGCGGCTCCACAGCGG
CCGCTATGTAGGGATAATTCAGAAGTAACTGCTGTTGTTTTGATTGTTATGCTATGGAATCTTGTAAAGATGGGCAGGTG
TTTCTTTATTTGTGTTGGATTGGGGAGCTACATAATCAAATGCCTTTCTTTTGATGGTCTGTTTCACTAAAAGAAAAAAT
ATCATGCTGCTGGGTTTCCTTTCCAAAGAAATGTAATCTGTTCCTTGAGAATTGGCTGTATGAACTGTTAATTGGTGGCA
ATCAAACTGCTCTTTTTCCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis