Browse Element(s) Details


OsAffx.24873.1.S1_x_at

Description tigr:9630.m05463
TID=OsAffx.24873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5504011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55000Os.15421.1.S1_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.1.S1_x_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.2.S1_at9/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55010Os.50477.1.S1_at11/112+33694546..33700463expressed protein
LOC_Os02g55010Os.4222.1.S1_at1/112+33694546..33700463expressed protein
LOC_Os02g55020Os.53988.1.S1_at10/112+33700647..33702979expressed protein
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24873.1.S1_x_at--826--4571Chr02:33715040..33715064 (25 bp)
GCGCGGAAGTCGAAGGATGCCCTAA
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--673--71Chr02:33715078..33715102 (25 bp)
ATTGCTGTTCTTGATGGTTGCCTCA
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--201--871Chr02:33715124..33715148 (25 bp)
ATGGCGAGATACTTCCTACGCGTGA
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--377--5551Chr02:33715153..33715177 (25 bp)
GAAACTGGGCACCTTGATCGTGAGA
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--172--7651Chr02:33715187..33715211 (25 bp)
GGGAGCTCTACATGTATACCAACAG
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--610--671Chr02:33715292..33715316 (25 bp)
ATGACAGCTTACTGCAACCGGGATT
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--19--2631Chr02:33715307..33715331 (25 bp)
AACCGGGATTGCTGCGTGATAAAAT
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--623--2631Chr02:33715376..33715400 (25 bp)
AACCTGCTCTCAGCCTGGATGGTGA
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--676--9611Chr02:33715433..33715457 (25 bp)
TCATGCAACGTCAGGCTTGGGTTCT
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--1105--10211Chr02:33715501..33715525 (25 bp)
TTTGGCACTGACACATACTTGGGTT
LOC_Os02g55040
OsAffx.24873.1.S1_x_at--733--8711Chr02:33715526..33715550 (25 bp)
TGTCCCTCGCGTATTGTCCTAGTAG
LOC_Os02g55040
Target Sequence 
GCGCGGAAGTCGAAGGATGCCCTAAGGCCAATAGGGGTATTGCTGTTCTTGATGGTTGCCTCAGGATGGTCGAATTGGAA
GTTCATGGCGAGATACTTCCTACGCGTGACCCTGAAACTGGGCACCTTGATCGTGAGATCAAGAACTGGGAGCTCTACAT
GTATACCAACAGCAAGATCACCGGTGCTTGGGAGGATTGGCAATTGGTGCACGGAGTTGAAGCTTCTCAAATCAATATCG
ACCAAGCGATTCATGACAGCTTACTGCAACCGGGATTGCTGCGTGATAAAATGCAGGATGGCAAGGAGAGGAAATTGCAC
AACCTCCTCACATCTCAACCTGCTCTCAGCCTGGATGGTGAAGGTGTTGTTTACTTGCTGACAAAGGCCAAATTCATGCA
ACGTCAGGCTTGGGTTCTTGCTGTTGATGTTAAGGGCAACAAAATACTAGGATTAGCTGAGTTTGGCACTGACACATACT
TGGGTTTGTCCCTCGCGTATTGTCCTAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24873.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis