Browse Element(s) Details


Os.10548.2.S1_at

Description gb:AK073936.1
DB_XREF= gi:32983959
TID=Os.10548.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033077J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033077J01, full insert sequence.
FL= gb:AK073936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5513011/11Serine carboxypeptidase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein
LOC_Os02g55110Os.21370.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55110OsAffx.24876.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55120Os.27119.1.S1_at10/112+33753148..33756764Translation initiation factor IF-3, C-terminal domain containing protein, expressed
LOC_Os02g55130Os.10548.2.S1_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55130Os.10548.1.S1_s_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55140Os.5433.1.S1_at11/112+33773392..33776827Cytosol aminopeptidase, putative, expressed
LOC_Os02g55150OsAffx.24878.1.S1_at11/112+33780355..33785071formin homology 2 domain-containing protein, putative, expressed
LOC_Os02g55160OsAffx.12650.1.S1_at11/112+33785317..33786760expressed protein
LOC_Os02g55170OsAffx.24879.1.S1_at11/112+33787265..33788936formin homology 2 domain-containing protein, putative
LOC_Os02g55180Os.24797.1.A1_at11/112+33791497..33797992Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10548.2.S1_at--917--7691Chr02:33769258..33769282 (25 bp)
GGGTGTTCAGGTGAGCTGGAGGACC
LOC_Os02g55130
Os.10548.2.S1_at--950--3891Chr02:33769273..33769297 (25 bp)
CTGGAGGACCTGGAATTGGTGAATT
LOC_Os02g55130
Os.10548.2.S1_at--477--5191Chr02:33769285..33769309 (25 bp)
GAATTGGTGAATTTATCCTTTTGGT
LOC_Os02g55130
Os.10548.2.S1_at--1012--5211Chr02:33769293..33769317 (25 bp)
GAATTTATCCTTTTGGTTCAGCATG
LOC_Os02g55130
Os.10548.2.S1_at--93--10151Chr02:33769298..33769322 (25 bp)
TATCCTTTTGGTTCAGCATGGAACT
LOC_Os02g55130
Os.10548.2.S1_at--1121--8551Chr02:33769306..33769330 (25 bp)
TGGTTCAGCATGGAACTAGTTCTTC
LOC_Os02g55130
Os.10548.2.S1_at--246--8171Chr02:33769317..33769341 (25 bp)
GGAACTAGTTCTTCAGAGATCATGA
LOC_Os02g55130
Os.10548.2.S1_at--1158--6031Chr02:33769332..33769356 (25 bp)
GAGATCATGAGCTATTTGTCACTTG
LOC_Os02g55130
Os.10548.2.S1_at--848--691Chr02:33769338..33769362 (25 bp)
ATGAGCTATTTGTCACTTGATGAAA
LOC_Os02g55130
Os.10548.2.S1_at--324--3631Chr02:33769353..33769377 (25 bp)
CTTGATGAAAATGCAGTGGCGACAC
LOC_Os02g55130
Os.10548.2.S1_at--852--6311Chr02:33769356..33769380 (25 bp)
GATGAAAATGCAGTGGCGACACGGA
LOC_Os02g55130
Target Sequence 
GGGTGTTCAGGTGAGCTGGAGGACCTGGAATTGGTGAATTTATCCTTTTGGTTCAGCATGGAACTAGTTCTTCAGAGATC
ATGAGCTATTTGTCACTTGATGAAAATGCAGTGGCGACACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10548.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis