Browse Element(s) Details


OsAffx.12650.1.S1_at

Description tigr:9630.m05479
TID=OsAffx.12650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5516011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55130Os.10548.2.S1_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55130Os.10548.1.S1_s_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55140Os.5433.1.S1_at11/112+33773392..33776827Cytosol aminopeptidase, putative, expressed
LOC_Os02g55150OsAffx.24878.1.S1_at11/112+33780355..33785071formin homology 2 domain-containing protein, putative, expressed
LOC_Os02g55160OsAffx.12650.1.S1_at11/112+33785317..33786760expressed protein
LOC_Os02g55170OsAffx.24879.1.S1_at11/112+33787265..33788936formin homology 2 domain-containing protein, putative
LOC_Os02g55180Os.24797.1.A1_at11/112+33791497..33797992Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g55190Os.50902.1.S1_at10/112+33799150..33800616expressed protein
LOC_Os02g55200Os.32481.1.S1_s_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.10314.1.S1_a_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.2.S1_x_at6/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.1.S1_at5/112+33801145..33809546expressed protein
LOC_Os02g55210OsAffx.24880.1.S1_at11/112+33809943..33812507carboxyl-terminal peptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12650.1.S1_at--1135--9751Chr02:33786153..33786177 (25 bp)
TAATGAGGTCCGAGTGTCTGAAGTC
LOC_Os02g55160
OsAffx.12650.1.S1_at--1054--8231Chr02:33786190..33786214 (25 bp)
GGCAAAGCTTCTGGGACATATGTTC
LOC_Os02g55160
OsAffx.12650.1.S1_at--669--8131Chr02:33786203..33786227 (25 bp)
GGACATATGTTCTTGTACTGCTAGA
LOC_Os02g55160
OsAffx.12650.1.S1_at--319--7011Chr02:33786217..33786241 (25 bp)
GTACTGCTAGATTCCTTTTCTATGG
LOC_Os02g55160
OsAffx.12650.1.S1_at--1001--5531Chr02:33786299..33786323 (25 bp)
GAAACTTCTCAAGGTTTTCACAGGA
LOC_Os02g55160
OsAffx.12650.1.S1_at--759--7611Chr02:33786422..33786446 (25 bp)
GGGAAACGCTGATTATACTTGTACT
LOC_Os02g55160
OsAffx.12650.1.S1_at--227--4671Chr02:33786512..33786536 (25 bp)
GCGGAGGTGTGCACAAAGCTATCAA
LOC_Os02g55160
OsAffx.12650.1.S1_at--1155--9711Chr02:33786533..33786557 (25 bp)
TCAAGGATGCGGTCGATGCTGAATT
LOC_Os02g55160
OsAffx.12650.1.S1_at--220--10351Chr02:33786559..33786677 (25 bp)
TTTACGAATCTATCAGTCCCTGTGG
LOC_Os02g55160
OsAffx.12650.1.S1_at--845--9311Chr02:33786669..33786693 (25 bp)
TCCCTGTGGCTGAACTGGTGAGGAC
LOC_Os02g55160
OsAffx.12650.1.S1_at--239--151Chr02:33786706..33786730 (25 bp)
ATTACCGTGCTTGAAGGTAGTGCCA
LOC_Os02g55160
Target Sequence 
TAATGAGGTCCGAGTGTCTGAAGTCAGAGGCATTGCAGGCAAAGCTTCTGGGACATATGTTCTTGTACTGCTAGATTCCT
TTTCTATGGACAATAGAGAATCTGATGACAATGCAGTGACACTGGAAGCTCTAGAAAATTCAGGTGGAAACTTCTCAAGG
TTTTCACAGGAAGCTAGTGGAGAGGCTGATGATTCTGGAGGTTGTGAAGGGGAGGGCATGATCGATCTAAGGGAAACGCT
GATTATACTTGTACTAGTATTTATGGGTAAAATGGGGGAAACAGGGGCTAATGAGACAGTGGGCGGCGGAGGAGGAAGAG
GCGGAGGTGTGCACAAAGCTATCAAGGATGCGGTCGATGCTGAATTATTTACGAATCTATCAGTCCCTGTGGCTGAACTG
GTGAGGACGGTGCTTGGGGTATTACCGTGCTTGAAGGTAGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis