Browse Element(s) Details


Os.38378.1.S1_a_at

Description gb:AK120535.1
DB_XREF= gi:37990158
TID=Os.38378.1
CNT=143
FEA=FLmRNA
TIER=FL+Stack
STK=38
UG=Os.38378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative light-regulated protein (P0672D08.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128K04, full insert sequence.
FL= gb:AK120535.1 gb:AK067670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0134011/11cytokinin-repressed protein CR9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01295Os.13236.1.S1_at11/111+138761..141356expressed protein
LOC_Os01g01302Os.9865.1.S1_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01302Os.9865.2.S1_x_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01307Os.10818.1.S1_at11/111+144887..147374Translocon-associated protein beta containing protein, expressed
LOC_Os01g01312Os.24886.1.S1_at9/111+148625..153251SNF2 domain-containing protein, putative, expressed
LOC_Os01g01320NANA1+154530..157743retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01330NANA1+158167..160909retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g01340Os.38378.1.S1_a_at11/111+165277..167177cytokinin-repressed protein CR9, putative, expressed
LOC_Os01g01350Os.30812.1.S1_at11/111+167600..169969SNF7 family protein, expressed
LOC_Os01g01360Os.34674.1.S1_at11/111+175409..177377POT family protein, expressed
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38378.1.S1_a_at--594--651Chr01:167038..167062 (25 bp)
ATGCAGACCGCTGCTAGCAGTGTCG
LOC_Os01g01340
Os.38378.1.S1_a_at--649--10011Chr01:167024..167048 (25 bp)
TAGCAGTGTCGTTGGATTGTCGGCC
LOC_Os01g01340
Os.38378.1.S1_a_at--906--6591Chr01:167010..167034 (25 bp)
GATTGTCGGCCGTGTTGCCCGCTGC
LOC_Os01g01340
Os.38378.1.S1_a_at--1044--5051Chr01:166974..166998 (25 bp)
GCAGCCTGCAGATTCAGGCTCCTCG
LOC_Os01g01340
Os.38378.1.S1_a_at--818--9331Chr01:166952..166976 (25 bp)
TCGCCGTGTTGCGTTGCGCGTTCGT
LOC_Os01g01340
Os.38378.1.S1_a_at--227--8031Chr01:166895..166919 (25 bp)
GGAGGTGGACTACAGCTCTAACATC
LOC_Os01g01340
Os.38378.1.S1_a_at--263--1571Chr01:166701..166906 (25 bp)
AGCTCTAACATCTCGGTGTTTCCGA
LOC_Os01g01340
Os.38378.1.S1_a_at--359--2511Chr01:166695..166900 (25 bp)
AACATCTCGGTGTTTCCGATGGAGG
LOC_Os01g01340
Os.38378.1.S1_a_at--928--6831Chr01:166684..166708 (25 bp)
GTTTCCGATGGAGGCGTGCGACCTC
LOC_Os01g01340
Os.38378.1.S1_a_at--1072--5311Chr01:166569..166593 (25 bp)
GAAGTCGACAGGGACTACCTATCCT
LOC_Os01g01340
Os.38378.1.S1_a_at--436--7631Chr01:166559..166583 (25 bp)
GGGACTACCTATCCTACGACGAGCC
LOC_Os01g01340
Target Sequence 
ATGCAGACCGCTGCTAGCAGTGTCGTTGGATTGTCGGCCGTGTTGCCCGCTGCTGTGAAGGGGCGCAGCCTGCAGATTCA
GGCTCCTCGCCGTGTTGCGTTGCGCGTTCGTGCGGCGGCGGCGGCGGTGGCAGTGGAGGCTGCGGAGGTGGACTACAGCT
CTAACATCTCGGTGTTTCCGATGGAGGCGTGCGACCTCATCGGCGGCGAGGCGTGCAACGTGCAGATGTACCCAGAGGCC
AAGCTCTCATCATCGGCTGCTGTTGCTGTTTCTCGTGCGGCGGCGGAGGAAGTCGACAGGGACTACCTATCCTACGACGA
GCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38378.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis