Browse Element(s) Details


Os.9865.2.S1_x_at

Description gb:NM_183452.1
DB_XREF= gi:34894031
GEN=P0672D08.28
TID=Os.9865.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.28 (P0672D08.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0672D08.28 (P0672D08.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0130211/11shikimate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01250NANA1+114883..117473transposon protein, putative, unclassified
LOC_Os01g01260NANA1+118104..124259transposon protein, putative, unclassified
LOC_Os01g01270OsAffx.20387.1.S1_x_at2/111+125699..130361retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01280Os.7527.1.S1_at11/111+131102..132244expressed protein
LOC_Os01g01290Os.48026.1.A1_at11/111+136952..138353Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g01295Os.13236.1.S1_at11/111+138761..141356expressed protein
LOC_Os01g01302Os.9865.1.S1_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01302Os.9865.2.S1_x_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01307Os.10818.1.S1_at11/111+144887..147374Translocon-associated protein beta containing protein, expressed
LOC_Os01g01312Os.24886.1.S1_at9/111+148625..153251SNF2 domain-containing protein, putative, expressed
LOC_Os01g01320NANA1+154530..157743retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01330NANA1+158167..160909retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g01340Os.38378.1.S1_a_at11/111+165277..167177cytokinin-repressed protein CR9, putative, expressed
LOC_Os01g01350Os.30812.1.S1_at11/111+167600..169969SNF7 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9865.2.S1_x_at--58--10191Chr01:143035..143059 (25 bp)
TATACCGCTACCTCTGCAGTGAAGA
LOC_Os01g01302
Os.9865.2.S1_x_at--722--2331Chr01:143085..143109 (25 bp)
AAAGATGCCCTCAATGCTTTCCGGG
LOC_Os01g01302
Os.9865.2.S1_x_at--405--7651Chr01:143304..143328 (25 bp)
GGGATGGTGCTGTCATGAACTCAAC
LOC_Os01g01302
Os.9865.2.S1_x_at--889--5471Chr01:143320..143344 (25 bp)
GAACTCAACCAATCTGTATGCTGCC
LOC_Os01g01302
Os.9865.2.S1_x_at--640--3651Chr01:143378..143402 (25 bp)
CTTCTCATCAACTCTTCTTATGCTA
LOC_Os01g01302
Os.9865.2.S1_x_at--460--8311Chr01:143415..143439 (25 bp)
GGCTACTGAGGCATGGAGTCTCCAT
LOC_Os01g01302
Os.9865.2.S1_x_at--554--2751Chr01:143483..143507 (25 bp)
AAGACACAAGCTACTTCAGACCCTG
LOC_Os01g01302
Os.9865.2.S1_x_at--593--1391Chr01:143500..143522 (23 bp)
AGACCCTGATTCCTTTTCTGAGGCA
LOC_Os01g01302
Os.9865.2.S1_x_at--968--5931Chr01:143913..143937 (25 bp)
GAGCAGAGTCCGACAGCGACACGAT
LOC_Os01g01302
Os.9865.2.S1_x_at--1110--2971Chr01:144113..144136 (24 bp)
AATGTGGCATCTCAACTGGGCTACA
LOC_Os01g01302
Os.9865.2.S1_x_at--428--1171Chr01:144136..144160 (25 bp)
AGTAGCATCGACTCAGTGACCCTAG
LOC_Os01g01302
Target Sequence 
TATACCGCTACCTCTGCAGTGAAGAGCTGCTGGAGGATGTTCTTGGAGGCAAAGATGCCCTCAATGCTTTCCGGGAATCC
GACCTCAACGGCTACCTCGAAGTCGAGACTGAAGGCCTGAAACAGCTCACCTCCATGGGCAGCCTCGTGCTTTGCTGTGG
GGATGGTGCTGTCATGAACTCAACCAATCTGTATGCTGCCTTCACCCACCATTCTCTCATATCTCACATCCGCCTTCTCA
TCAACTCTTCTTATGCTAATTCTCTTAGAGGGCTACTGAGGCATGGAGTCTCCATTTGGATTGATATTCCTCTGGAATTG
GTGGTGAATGATATGTTGAAGACACAAGCTACTTCAGACCCTGATTCCTTTTCTGAGGCAATGAGCAGAGTCCGACAGCG
ACACGATGAACTAAAAGAGCGCTATGGAGTTTCTGATATAACTGTTTCAGTACAAAATGTGGCATCTCAACTGGGCTACA
GTAGCATCGACTCAGTGACCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9865.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis