Browse Element(s) Details


Os.13236.1.S1_at

Description gb:AK100002.1
DB_XREF= gi:32985211
TID=Os.13236.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.27 (P0672D08.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135E13, full insert sequence.
FL= gb:AK100002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0129511/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01250NANA1+114883..117473transposon protein, putative, unclassified
LOC_Os01g01260NANA1+118104..124259transposon protein, putative, unclassified
LOC_Os01g01270OsAffx.20387.1.S1_x_at2/111+125699..130361retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01280Os.7527.1.S1_at11/111+131102..132244expressed protein
LOC_Os01g01290Os.48026.1.A1_at11/111+136952..138353Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g01295Os.13236.1.S1_at11/111+138761..141356expressed protein
LOC_Os01g01302Os.9865.1.S1_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01302Os.9865.2.S1_x_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01307Os.10818.1.S1_at11/111+144887..147374Translocon-associated protein beta containing protein, expressed
LOC_Os01g01312Os.24886.1.S1_at9/111+148625..153251SNF2 domain-containing protein, putative, expressed
LOC_Os01g01320NANA1+154530..157743retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01330NANA1+158167..160909retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g01340Os.38378.1.S1_a_at11/111+165277..167177cytokinin-repressed protein CR9, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13236.1.S1_at--868--6091Chr01:140756..140780 (25 bp)
GAGTCGAGCCAATTTTGTAATCTGA
LOC_Os01g01295
Os.13236.1.S1_at--452--8891Chr01:140796..140820 (25 bp)
TGAGGAGCAACGTCTATGCCCAAGA
LOC_Os01g01295
Os.13236.1.S1_at--487--2791Chr01:140817..140841 (25 bp)
AAGAGGATCTAACTGTGCGCCGCAG
LOC_Os01g01295
Os.13236.1.S1_at--633--3631Chr01:140845..140869 (25 bp)
CTTGCCTGCTTCTGAAGTTGTGTAC
LOC_Os01g01295
Os.13236.1.S1_at--729--251Chr01:140954..140978 (25 bp)
ATATCGGATCTAGTTTATGCTGTGA
LOC_Os01g01295
Os.13236.1.S1_at--674--6631Chr01:140982..141006 (25 bp)
GTTGTGCGGCATTGTAAACCGGCAT
LOC_Os01g01295
Os.13236.1.S1_at--539--3591Chr01:141004..141028 (25 bp)
CATTTTGGTATTGCCTCATGCCTAT
LOC_Os01g01295
Os.13236.1.S1_at--511--6671Chr01:141051..141075 (25 bp)
GTTGCTTGCGTTCTAGGGACATGAT
LOC_Os01g01295
Os.13236.1.S1_at--1009--10711Chr01:141135..141159 (25 bp)
TTGCTGTTGCCACAATCTGACTGGA
LOC_Os01g01295
Os.13236.1.S1_at--509--8331Chr01:141238..141262 (25 bp)
GGCTGCTGTAAAAGTCTCTTCTTTC
LOC_Os01g01295
Os.13236.1.S1_at--131--1011Chr01:141275..141299 (25 bp)
AGGATCATCCTTCGTTGTATTTATA
LOC_Os01g01295
Target Sequence 
GAGTCGAGCCAATTTTGTAATCTGAGCTAGATTGCTTTATTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCG
CCGCAGGGTCTTGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTGTTTTGATAG
GTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAGTTTATGCTGTGAATTGTTGTGCGGCATTG
TAAACCGGCATTTTGGTATTGCCTCATGCCTATTGTGAGGTTTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGAT
TGGACATTTGAGAATGAGGATCATTCTTTTCAGTTTTGGGCTACCCGTTGTTCCAGTCCTTGCTGTTGCCACAATCTGAC
TGGAGCGGGGATGAATTGATTTGCAAAAGAGATGTAATACTTGTTTTCTCATGCAAATTGTACCAACATTGCAGAGGGAT
ATGGCTGCTGTAAAAGTCTCTTCTTTCCTTTGCAAAAATAGGATCATCCTTCGTTGTATTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis