Browse Element(s) Details


Os.48026.1.A1_at

Description gb:NM_183450.1
DB_XREF= gi:34894027
GEN=P0672D08.26
TID=Os.48026.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.26 (P0672D08.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0672D08.26 (P0672D08.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0129011/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01250NANA1+114883..117473transposon protein, putative, unclassified
LOC_Os01g01260NANA1+118104..124259transposon protein, putative, unclassified
LOC_Os01g01270OsAffx.20387.1.S1_x_at2/111+125699..130361retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01280Os.7527.1.S1_at11/111+131102..132244expressed protein
LOC_Os01g01290Os.48026.1.A1_at11/111+136952..138353Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g01295Os.13236.1.S1_at11/111+138761..141356expressed protein
LOC_Os01g01302Os.9865.1.S1_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01302Os.9865.2.S1_x_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01307Os.10818.1.S1_at11/111+144887..147374Translocon-associated protein beta containing protein, expressed
LOC_Os01g01312Os.24886.1.S1_at9/111+148625..153251SNF2 domain-containing protein, putative, expressed
LOC_Os01g01320NANA1+154530..157743retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01330NANA1+158167..160909retrotransposon protein, putative, Ty1-copia subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48026.1.A1_at--850--671Chr01:137910..137934 (25 bp)
ATGACACGATTGTTGTTGTACCGGA
LOC_Os01g01290
Os.48026.1.A1_at--531--3331Chr01:137914..137938 (25 bp)
CACGATTGTTGTTGTACCGGAGGGT
LOC_Os01g01290
Os.48026.1.A1_at--1014--3491Chr01:137956..137980 (25 bp)
CATGGATGTTGCTGGTTTAGTTATC
LOC_Os01g01290
Os.48026.1.A1_at--464--10091Chr01:138111..138135 (25 bp)
TAGGAACGGCCGATGATTCATTGCT
LOC_Os01g01290
Os.48026.1.A1_at--1114--5531Chr01:138165..138189 (25 bp)
GAAACGACGGTGTTTTGCACAGCGG
LOC_Os01g01290
Os.48026.1.A1_at--1097--1911Chr01:138171..138195 (25 bp)
ACGGTGTTTTGCACAGCGGGATTGT
LOC_Os01g01290
Os.48026.1.A1_at--551--1632Chr08:9646709..9646794 (24 bp)
AGCGGGATTGTGTTGCATGAAGACC
NONE
Os.48026.1.A1_at--305--6611Chr01:138190..138214 (25 bp)
GATTGTGTTGCATGAAGACCATTCC
LOC_Os01g01290
Os.48026.1.A1_at--364--5371Chr01:138203..138227 (25 bp)
GAAGACCATTCCTAGGTGACGTGAT
LOC_Os01g01290
Os.48026.1.A1_at--634--1031Chr01:138216..138241 (25 bp)
AGGTGACGTGATTTTAGCAACCCAA
LOC_Os01g01290
Os.48026.1.A1_at--329--6151Chr01:138305..138329 (25 bp)
GAGGTTGTAACTCTTTTTCTTGTTG
LOC_Os01g01290
Target Sequence 
ATGACACGATTGTTGTTGTACCGGAGGGTGTAGATATTAGTGGCACCATGGATGTTGCTGGTTTAGTTATCAATGGTCAA
GAAGAAGAACATGAGAGGAAAACAAATGTTGAGCAAAATGAGATATATGAAAGCATTGATATAGGAATAATCAATGCAAG
TGTTGCGGATGGTAATAAATGCAGTATTAGGTGGGATGAATTAGGAACGGCCGATGATTCATTGCTAGATAAATTTTTGG
AGGAGTTTCAAGCAAGAAACGACGGTGTTTTGCACAGCGGGATTGTGTTGCATGAAGACCATTCCTAGGTGACGTGATTT
TAGCAACCCAANGTAGTAGCNATGCCNATATAAGTAATTGAGTTGGCAAGTTTTGTTTATGTCTTTTGTAAGAATGAGGT
TGTAACTCTTTTTCTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48026.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis