Browse Element(s) Details


Os.30812.1.S1_at

Description gb:AK108287.1
DB_XREF= gi:32993496
TID=Os.30812.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.33 (P0672D08.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D09, full insert sequence.
FL= gb:AK108287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0135011/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01302Os.9865.1.S1_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01302Os.9865.2.S1_x_at11/111+142379..144649shikimate kinase family protein, expressed
LOC_Os01g01307Os.10818.1.S1_at11/111+144887..147374Translocon-associated protein beta containing protein, expressed
LOC_Os01g01312Os.24886.1.S1_at9/111+148625..153251SNF2 domain-containing protein, putative, expressed
LOC_Os01g01320NANA1+154530..157743retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01330NANA1+158167..160909retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g01340Os.38378.1.S1_a_at11/111+165277..167177cytokinin-repressed protein CR9, putative, expressed
LOC_Os01g01350Os.30812.1.S1_at11/111+167600..169969SNF7 family protein, expressed
LOC_Os01g01360Os.34674.1.S1_at11/111+175409..177377POT family protein, expressed
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30812.1.S1_at--751--7831Chr01:168593..168617 (25 bp)
GGTAGAAGCTACAACATCCCTGACG
LOC_Os01g01350
Os.30812.1.S1_at--98--10771Chr01:168302..168326 (25 bp)
TTGAGTCAAGTGCAGTCCCATCGTA
LOC_Os01g01350
Os.30812.1.S1_at--331--1531Chr01:168208..168232 (25 bp)
AGCAGTCCCAGTAAGCAGGCAGCAG
LOC_Os01g01350
Os.30812.1.S1_at--360--8911Chr01:167868..167892 (25 bp)
TGAGCTAGGATTGCCAGCAGTCCCT
LOC_Os01g01350
Os.30812.1.S1_at--682--3791Chr01:167845..167869 (25 bp)
CTCGAGCATCAATCCGCAGTTAGAA
LOC_Os01g01350
Os.30812.1.S1_at--582--7071Chr01:167818..167842 (25 bp)
GTAATTCATGTACCTTTGCTTGTGA
LOC_Os01g01350
Os.30812.1.S1_at--344--10751Chr01:167787..167811 (25 bp)
TTGACGTGAGAACCCATTGCTATGC
LOC_Os01g01350
Os.30812.1.S1_at--138--9771Chr01:167745..167769 (25 bp)
TAATCTGTGTATGTGTTTCTCTTCA
LOC_Os01g01350
Os.30812.1.S1_at--943--5911Chr01:167696..167720 (25 bp)
GAGCTTGCAGTCTTATATCTTCCAC
LOC_Os01g01350
Os.30812.1.S1_at--602--371Chr01:167680..167704 (25 bp)
ATCTTCCACTCTGCCTTTTAGAAAA
LOC_Os01g01350
Os.30812.1.S1_at--1107--3551Chr01:167616..167640 (25 bp)
CATCATATGATGCTTTGTCGGTGGT
LOC_Os01g01350
Target Sequence 
GGTAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAGAACTAATGGGAGAACTGGATGCNTNNGAGGCTGATATGGA
GTTTGAGTCAAGTGCAGTCCCATCGTATCTTCAACCAGACAAGGAATCCGATTTCGATGCAGAGCTTAATTTGCCAGCTG
CACCTACCGCTCCTGCAGCAGTCCCAGTAAGCAGGCAGCAGGTGGATGAGCTAGGATTGCCAGCAGTCCCTCGAGCATCA
ATCCGCAGTTAGAACAGTAATTCATGTACCTTTGCTTGTGATTGGCATTGACGTGAGAACCCATTGCTATGCAATTGCAG
TTGAACAATTAATCTGTGTATGTGTTTCTCTTCATGAGTCGCCTTGATTTGTTAAACCGAGCTTGCAGTCTTATATCTTC
CACTCTGCCTTTTAGAAAAGGGGATTTCGAGTTGTGATGGGTTGAGGTTGATTAGATGCATCATATGATGCTTTGTCGGT
GGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis