Browse Element(s) Details


Os.7286.1.S1_at

Description gb:AK069518.1
DB_XREF= gi:32979542
TID=Os.7286.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024A16, full insert sequence.
FL= gb:AK069518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0814011/11Tubulin-tyrosine ligase family protein, expressed
LOC_Os03g081601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08070Os.26448.1.A1_at11/113+4099099..4106050copper-translocating P-type ATPase family protein, expressed
LOC_Os03g08080Os.27944.1.S1_at10/113+4108770..4110263YGGT family protein, expressed
LOC_Os03g08090Os.50444.1.S1_at11/113+4110245..4111661hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os03g08100Os.14134.1.S1_at10/113+4112575..4115607hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08110Os.48498.1.S1_at11/113+4116077..4121832hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g08120OsAffx.15367.1.S1_at1/113+4124340..4127243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g08130OsAffx.25014.1.S1_at11/113+4127938..4129282hypothetical protein
LOC_Os03g08140Os.7286.1.S1_at11/113+4129867..4136536Tubulin-tyrosine ligase family protein, expressed
LOC_Os03g08150OsAffx.12776.1.S1_at11/113+4136722..4137464Cupin family protein, expressed
LOC_Os03g08160OsAffx.3171.1.S1_at11/113+4140669..4144127hypothetical protein
LOC_Os03g08160Os.7286.1.S1_at1/113+4140669..4144127hypothetical protein
LOC_Os03g08170Os.20885.1.S1_at11/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170OsAffx.30714.1.S1_x_at1/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08180OsAffx.12777.1.S1_at11/113+4158638..4159174hypothetical protein
LOC_Os03g08190OsAffx.25015.1.S1_at11/113+4159536..4159937hypothetical protein
LOC_Os03g08200OsAffx.12778.1.S1_at11/113+4160779..4161603expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0004835molecular_functiontubulin-tyrosine ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7286.1.S1_at--1131--8051Chr03:4135482..4135506 (25 bp)
GGAGCACCAAGGTCAGCTTGCATTT
LOC_Os03g08140
Os.7286.1.S1_at--893--611Chr03:4135520..4135544 (25 bp)
ATGCGTGTCTAGTTACTGACTTCTG
LOC_Os03g08140
Os.7286.1.S1_at--613--7451Chr03:4135603..4135627 (25 bp)
GTGTCTTTGAGTCAGCCACAGCTGT
LOC_Os03g08140
Os.7286.1.S1_at--1037--9571Chr03:4135628..4135652 (25 bp)
TCATCCTGAGATGCAGAACCCGTTC
LOC_Os03g08140
Os.7286.1.S1_at--791--5431Chr03:4135643..4135667 (25 bp)
GAACCCGTTCTCTAGGGCTATCTAT
LOC_Os03g08140
Os.7286.1.S1_at--178--231Chr03:4136207..4136231 (25 bp)
ATATTGTCCGGACTGCACGAGGGCA
LOC_Os03g08140
Os.7286.1.S1_at--28--10131Chr03:4136238..4136262 (25 bp)
TATGACACTCAAGCTCTCGTGGGAA
LOC_Os03g08140
Os.7286.1.S1_at--128--3832Chr03:4143194..4143218 (25 bp)
CTGCCTCTTTCTGGACGAGCTTAAA
LOC_Os03g08160
Os.7286.1.S1_at--331--6271Chr03:4136334..4136358 (25 bp)
GATGTATCGCCGCTGTAATCACCAC
LOC_Os03g08140
Os.7286.1.S1_at--46--7391Chr03:4136411..4136435 (25 bp)
GTGATCCTGTCGTTTTATATGCCAT
LOC_Os03g08140
Os.7286.1.S1_at--506--8751Chr03:4136491..4136515 (25 bp)
TGTACCATGCTTCGGATCAGATTGA
LOC_Os03g08140
Target Sequence 
GGAGCACCAAGGTCAGCTTGCATTTTTCTCTTTATATTATGCGTGTCTAGTTACTGACTTCTGACTAAAATTTTAGTTAA
ATGGCTGGAGATCCATGGACGCATACGGGATATGATACGATGTGTCTTTGAGTCAGCCACAGCTGTTCATCCTGAGATGC
AGAACCCGTTCTCTAGGGCTATCTATGGGGTTGATGTCATGCTTGATAATAAATTCAATCCGAAGATTTTGGAGGTGACA
TATTGTCCGGACTGCACGAGGGCATGCAAATATGACACTCAAGCTCTCGTGGGAAGCCAGGGTGTCATCAGGGGCACTGA
ATTTTTCAATACAGTGTTTGGCTGCCTCTTTCTGGACGAGCTTAAAGATGTATCGCCGCTGTAATCACCACAACAAGGTT
GCTGTAACACCGAAGTTCAACACAATACACGCACATGTGAGTTGTGATCCTGTCGTTTTATATGCCATACATATCAAATT
TGCTCAGTACAATTACAAAGGGGGTGTGATGCTGCCTCCTGCCTGTACCATGCTTCGGATCAGATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis