Browse Element(s) Details


OsAffx.15367.1.S1_at

Description tigr:9634.m01095
TID=OsAffx.15367.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g112309/11hypothetical protein
LOC_Os03g081201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11180Os.5813.1.S1_at11/116+5861189..5868597prolyl oligopeptidase family protein, expressed
LOC_Os06g11190Os.27029.1.S1_at11/116+5869108..5875410prolyl oligopeptidase family protein, expressed
LOC_Os06g11200Os.55429.1.S1_at11/116+5877575..587955012-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11210Os.47914.1.S1_at11/116+5883569..588514212-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11220NANA6+5890072..5891184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g11230OsAffx.15367.1.S1_at9/116+5891689..5893038hypothetical protein
LOC_Os06g11240Os.11914.1.S1_at11/116+5893912..589534912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11250OsAffx.27564.1.S1_at11/116+5898564..590037812-oxophytodienoate reductase 1, putative
LOC_Os06g11260NANA6+5904505..590488512-oxophytodienoate reductase 1, putative, expressed
LOC_Os06g11270Os.15852.1.S1_at1/116+5907096..5908469UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11280Os.8778.1.S1_a_at7/116+5911375..591328612-oxophytodienoate reductase 2, putative
LOC_Os06g11290Os.8778.1.S1_a_at11/116+5917119..591867912-oxophytodienoate reductase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15367.1.S1_at--656--4593Chr06:5892832..5892984 (25 bp)
GCGCAAGAAGCGATTGGTGATCCAA
LOC_Os06g11230
OsAffx.15367.1.S1_at--1060--8311NONE
GGCTCGGACTTTCCGCAGAGGACCA
NONE
OsAffx.15367.1.S1_at--388--5231NONE
GACTTTCCGCAGAGGACCACGGGAT
NONE
OsAffx.15367.1.S1_at--902--9295Chr03:4125280..4125301 (22 bp)
TCCGCAGAGGACCACGGGATTGCAA
LOC_Os03g08120
OsAffx.15367.1.S1_at--143--5151Chr06:5891967..5891991 (25 bp)
GCAACAACAAGCAATCGGGCAAACT
LOC_Os06g11230
OsAffx.15367.1.S1_at--732--491Chr06:5891954..5891978 (25 bp)
ATCGGGCAAACTACCAAAGCAAGGC
LOC_Os06g11230
OsAffx.15367.1.S1_at--981--2331Chr06:5891939..5891963 (25 bp)
AAAGCAAGGCGAGATCTGACCTGTT
LOC_Os06g11230
OsAffx.15367.1.S1_at--1065--8371Chr06:5891932..5891956 (25 bp)
GGCGAGATCTGACCTGTTGGATTTC
LOC_Os06g11230
OsAffx.15367.1.S1_at--830--9471Chr06:5891925..5891949 (25 bp)
TCTGACCTGTTGGATTTCGTGGGCG
LOC_Os06g11230
OsAffx.15367.1.S1_at--731--7331Chr06:5891844..5891868 (25 bp)
GTGCAGGCGGCGGAAGCTCGGCGGT
LOC_Os06g11230
OsAffx.15367.1.S1_at--613--4011Chr06:5891724..5891748 (25 bp)
CGTCGACAGCAGGACCTGCAGGCAT
LOC_Os06g11230
Target Sequence 
GCGCAAGAAGCGATTGGTGATCCAATTGGTGGGTCGGACACTTCGAGCGGGTGGCTCGGACTTTCCGCAGAGGACCACGG
GATTGCAACAACAAGCAATCGGGCAAACTACCAAAGCAAGGCGAGATCTGACCTGTTGGATTTCGTGGGCGGAGGTGGTC
TGCGGTGTCGGGCTCCGGCGGCGCTGCACGGCTTCGGCGAGCAGCAGGTGCAGGCGGCGGAAGCTCGGCGGTGCCGGCTC
TTGGAGGAGGCGGCGGACACCGGCGGCAGAGGAGGCGTCCTCTCCTGCGTCGGGGCAGCGTCGTCCATCACCGGGGGTCT
TCAGAGGCGTCGACAGCAGGACCTGCAGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis